Evidence map›Paper›PMID 28263556›Full record

ArticleACS chemical biology2017

A Chemical Probe Strategy for Interrogating Inhibitor Selectivity Across the MEK Kinase Family.

Kristine K Deibler, Rama K Mishra, Matthew R Clutter, Aleksandar Antanasijevic, Raymond Bergan, Michael Caffrey, Karl A Scheidt

Abstract read
In one paragraph

Article in ACS chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. MKK4 Inhibitors-Recent Development Status and Therapeutic Potential.International journal of molecular sciences · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. Non-'classical' MEKs: A review of MEK3-7 inhibitors.Bioorganic & medicinal chemistry letters · 2020
    Review
  15. Article
  16. Article
  17. Forbidden Coherence Transfer ofMolecules (Basel, Switzerland) · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Kristine K DeiblerDepartment of Chemistry, Northwestern University , Evanston, 60208, Illinois, United States.
Rama K MishraCenter for Molecular Innovation and Drug Discovery, Northwestern University , 2145 Sheridan Rd, Evanston, Illinois 60208, United States.
Matthew R ClutterChemistry of Life Processes Institute, Northwestern University , 2145 Sheridan Rd, Evanston, Illinois 60208, United States.
Aleksandar AntanasijevicDepartment of Biochemistry and Molecular Genetics, University of Illinois at Chicago , 900 S Ashland Ave, Chicago, Illinois 60607, United States.
Raymond BerganKnight Cancer Institute, Oregon Health & Science University , 3181 S.W. Sam Jackson Park Rd., Portland, Oregon 97239, United States.
Michael CaffreyDepartment of Biochemistry and Molecular Genetics, University of Illinois at Chicago , 900 S Ashland Ave, Chicago, Illinois 60607, United States.
Karl A ScheidtDepartment of Chemistry, Northwestern University , Evanston, 60208, Illinois, United States.ORCID 0000-0003-4856-3569
Northwestern University · USUniversity of Illinois Chicago · USOregon Health & Science University · US

Funding

Discovery of Selective MAP2K4 Inhibitors to Target MetastasisR01CA188015 · NCI · NORTHWESTERN UNIVERSITY · PI SCHEIDT, KARL A · 2015 to 2017
$1.0M
NCI NIH HHS R01 CA188015
6 · The paper itself

Abstract

MEK4 is an upstream kinase in MAPK signaling pathways where it phosphorylates p38 MAPK and JNK in response to mitogenic and cellular stress queues. MEK4 is overexpressed and induces metastasis in advanced prostate cancer lesions. However, the value of MEK4 as an oncology target has not been pharmacologically validated because selective chemical probes targeting MEK4 have not been developed. Despite a high level of sequence homology in the ATP-binding site, most reported MEK inhibitors are selective for MEK1/2 and display reduced potency toward other MEKs. Here, we present the first functional and binding selectivity-profiling platform of the MEK family. We applied the platform to profile a set of known kinase inhibitors and used the results to develop an in silico approach for small molecule docking against MEK proteins. The docking studies identified molecular features of the ligands and corresponding amino acids in MEK proteins responsible for high affinity binding versus those driving selectivity. WaterLOGSY and saturation transfer difference (STD) NMR spectroscopy techniques were utilized to understand the binding modes of active compounds. Further minor synthetic manipulations provide a proof of concept by showing how information gained through this platform can be utilized to perturb selectivity across the MEK family. This inhibitor-based approach pinpoints key features governing MEK family selectivity and clarifies empirical selectivity profiles for a set of kinase inhibitors. Going forward, the platform provides a rationale for facilitating the development of MEK-selective inhibitors, particularly MEK4 selective inhibitors, and repurposing of kinase inhibitors for probing the structural selectivity of isoforms.

Indexed as

Binding SitesComputer SimulationLigandsMAP Kinase Kinase 4MAP Kinase Kinase KinasesMolecular Docking SimulationProtein BindingProtein Kinase InhibitorsLigandsMAP2K4 protein, humanMAP Kinase Kinase 4MAP Kinase Kinase KinasesProtein Kinase Inhibitors

Identifiers

PMID28263556
PMCPMC5652073
OpenAlexW2594188492

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.