Evidence map›Paper›PMID 28262836›Full record

ArticleScientific reports2017

Dynamics of miRNA transcriptome during gonadal development of zebrafish.

Christopher Presslauer, Teshome Tilahun Bizuayehu, Martina Kopp, Jorge M O Fernandes, Igor Babiak

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 87 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. International journal of molecular sciences · 2023
    Article
  7. Article
  8. Article
  9. Localization and in silico-based functional analysis of miR-202 in bull testis.Reproduction in domestic animals = Zuchthygiene · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Christopher PresslauerFaculty of Biosciences and Aquaculture, Nord University, 8049 Bodø, Norway.
Teshome Tilahun BizuayehuFaculty of Biosciences and Aquaculture, Nord University, 8049 Bodø, Norway.
Martina KoppFaculty of Biosciences and Aquaculture, Nord University, 8049 Bodø, Norway.
Jorge M O FernandesFaculty of Biosciences and Aquaculture, Nord University, 8049 Bodø, Norway.
Igor BabiakFaculty of Biosciences and Aquaculture, Nord University, 8049 Bodø, Norway.
Nord University · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Studies in non-teleost vertebrates have found microRNAs (miRNAs) to be essential for proper gonadal development. However, comparatively little is known about their role during gonadal development in teleost fishes. So far in zebrafish, a model teleost, transcript profiling throughout gonadal development has not been established because of a tiny size of an organ in juvenile stages and its poor distinguishability from surrounding tissues. We performed small RNA sequencing on isolated gonads of See-Thru-Gonad line, from the undifferentiated state at 3 weeks post fertilization (wpf) to fully mature adults at 24 wpf. We identified 520 gonadal mature miRNAs; 111 of them had significant changes in abundance over time, while 50 miRNAs were either testis- or ovary-enriched significantly in at least one developmental stage. We characterized patterns of miRNA abundance over time including isomiR variants. We identified putative germline versus gonadal somatic miRNAs through differential small RNA sequencing of isolated gametes versus the whole gonads. This report is the most comprehensive analysis of the miRNA repertoire in zebrafish gonads during the sexual development to date and provides an important database from which functional studies can be performed.

Indexed as

Gene Expression Regulation, DevelopmentalTranscriptomeAnimalsFemaleGene Expression ProfilingGerm CellsGonadsHigh-Throughput Nucleotide SequencingMaleMicroRNAsOvaryTestisTime FactorsZebrafishMicroRNAs

Identifiers

PMID28262836
PMCPMC5338332
OpenAlexW2591938835

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.