Evidence map›Paper›PMID 28260536›Full record

ArticleEpidemiology and infection2017

Nationwide investigation of Shiga toxin-producing Escherichia coli among cattle in Japan revealed the risk factors and potentially virulent subgroups.

K Lee, M Kusumoto, T Iwata, S Iyoda, M Akiba

Open access · bronzeAbstract read
In one paragraph

Article in Epidemiology and infection, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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  11. Multi-Year Persistence of VerotoxigenicFrontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

K LeeDivision of Bacterial and Parasitic Disease Research,National Institute of Animal Health, National Agriculture and Food Research Organization,Tsukuba,Ibaraki,Japan.
M KusumotoDivision of Bacterial and Parasitic Disease Research,National Institute of Animal Health, National Agriculture and Food Research Organization,Tsukuba,Ibaraki,Japan.
T IwataDivision of Bacterial and Parasitic Disease Research,National Institute of Animal Health, National Agriculture and Food Research Organization,Tsukuba,Ibaraki,Japan.
S IyodaDepartment of Bacteriology I,National Institute of Infectious Diseases,Shinjuku,Tokyo,Japan.
M AkibaDivision of Bacterial and Parasitic Disease Research,National Institute of Animal Health, National Agriculture and Food Research Organization,Tsukuba,Ibaraki,Japan.
National Agriculture and Food Research Organization · JPNational Institute of Animal Health · JPNational Institute of Infectious Diseases · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A nationwide study of Shiga toxin-producing Escherichia coli (STEC) was performed to determine the prevalence, characteristics and risk factors for fecal shedding of STEC among cattle in Japan. Information on rearing practices was also collected to identify risk factors for fecal shedding of STEC. STEC was isolated from 24·1% of samples (133/551) collected from 59·1% of farms (65/110). Bayesian clustering using the virulence marker profiles of the isolates subdivided the isolates into four genetically distinct groups, two of which corresponded to eae- or saa-positive STEC, which can cause severe disease in human. Both STEC groups exhibited characteristic phylogeny and virulence marker profiles. It is noteworthy that the tellurite resistance gene was not detected in all saa-positive STEC isolates, suggesting that the standard isolation method using tellurite might lead to an underestimation of the prevalence of saa-positive STEC. A multivariate logistic regression model using epidemiological information revealed a significantly (P < 0·01) high odds ratio on STEC fecal shedding in tie-stall housing and a low odds ratio in flat feed box and mechanical ventilation. Information on isolate characteristics of the two major pathotypes and risk factors in rearing practices will facilitate the development of preventative measures for STEC fecal shedding from cattle.

Indexed as

Animal HusbandryAnimalsBacterial SheddingBayes TheoremCattleCattle DiseasesEscherichia coli InfectionsFecesFemaleJapanMalePhylogenyPrevalenceRisk FactorsShiga-Toxigenic Escherichia coliVirulence FactorsVirulence FactorsCattleJapanprevalenceShiga toxin-producing E. colivirulence factor

Identifiers

PMID28260536
PMCPMC9203336
OpenAlexW2591663690

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.