Evidence map›Paper›PMID 28260194›Full record

ArticleWorld journal of microbiology & biotechnology2017

RNA-Seq reveals the molecular mechanism of trapping and killing of root-knot nematodes by nematode-trapping fungi.

Ramesh Pandit, Reena Patel, Namrata Patel, Vaibhav Bhatt, Chaitanya Joshi, Pawan Kumar Singh, Anju Kunjadia

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Article in World journal of microbiology & biotechnology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

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0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Ramesh PanditDepartment of Animal Biotechnology, College of Veterinary Science and A.H., Anand Agricultural University, Anand, 388 001, Gujarat, India.
Reena PatelCenter for Interdisciplinary Studies in Science and Technology, Sardar Patel University, New V.V. Nagar, Anand, 388 121, Gujarat, India.
Namrata PatelDepartment of Animal Biotechnology, College of Veterinary Science and A.H., Anand Agricultural University, Anand, 388 001, Gujarat, India.
Vaibhav BhattDepartment of Pharmaceutical Sciences, Saurashtra University, Rajkot, 360 005, Gujarat, India.
Chaitanya JoshiDepartment of Animal Biotechnology, College of Veterinary Science and A.H., Anand Agricultural University, Anand, 388 001, Gujarat, India.
Pawan Kumar SinghValue Addition Research and Development Department-Human Health, National Innovation Foundation (NIF)-India, Mahudi Road, Ganhdinagar, 382650, Gujarat, India.
Anju KunjadiaCenter for Interdisciplinary Studies in Science and Technology, Sardar Patel University, New V.V. Nagar, Anand, 388 121, Gujarat, India. anjuaribas@gmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nematode-trapping fungi are well known for their inherent potential to trap and kill nematodes using specialized trapping devices. However, the molecular mechanisms underlying the trapping and subsequent processes are still unclear. Therefore, in this study, we examined differential genes expression in two nematode-trapping fungi after baiting with nematode extracts. In Arthrobotrys conoides, 809 transcripts associated with diverse functions such as signal transduction, morphogenesis, stress response and peroxisomal proteins, proteases, chitinases and genes involved in the host-pathogen interaction showed differential expression with fold change (>±1.5 fold) in the presence of nematode extract with FDR (p-value < 0.001). G-proteins and mitogen activated protein kinases are considered crucial for signal transduction mechanism. Results of qRT-PCR of 20 genes further validated the sequencing data. Further, variations in gene expression among Duddingtonia flagrans and A. conoides showed septicity of nematode-trapping fungi for its host. The findings illustrate the molecular mechanism of fungal parasitism in A. conoides which may be helpful in developing a potential biocontrol agent against parasitic nematodes.

Indexed as

AnimalsAscomycotaFungal ProteinsGene Expression Regulation, FungalHost-Pathogen InteractionsNematodaPest ControlRNA, FungalRoot Nodules, PlantSequence Analysis, RNAFungal ProteinsRNA, FungalArthrobotrys conoidesDuddingtonia flagransNematophagous fungiqRT-PCRRNA-Seq

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.