Evidence map›Paper›PMID 28259975›Full record

ArticleInternational journal of oncology2017

Gene expression profiling in bladder cancer identifies potential therapeutic targets.

Syed A Hussain, Daniel H Palmer, Wing-Kin Syn, Joseph J Sacco, Richard M D Greensmith, Taha Elmetwali, Vijay Aachi, Bryony H Lloyd, Puthen V Jithesh, John Arrand and 4 more

Open access · hybridAbstract read
In one paragraph

Article in International journal of oncology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Small Nucleolar RNAs (snoRNAs)-Based Risk Score Classifier Predicts Overall Survival in Bladder Carcinoma.Medical science monitor : international medical journal of experimental and clinical research · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Clinical andInternational journal of biological sciences · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Syed A HussainDepartment of Molecular and Clinical Cancer Medicine, University of Liverpool, Liverpool L69 3GA, UK.
Daniel H PalmerDepartment of Molecular and Clinical Cancer Medicine, University of Liverpool, Liverpool L69 3GA, UK.
Wing-Kin SynRegeneration and Repair Group, The Institute of Hepatology, Foundation of Liver Research, London SE5 9NT, UK.
Joseph J SaccoDepartment of Molecular and Clinical Cancer Medicine, University of Liverpool, Liverpool L69 3GA, UK.
Richard M D GreensmithDepartment of Molecular and Clinical Cancer Medicine, University of Liverpool, Liverpool L69 3GA, UK.
Taha ElmetwaliDepartment of Molecular and Clinical Cancer Medicine, University of Liverpool, Liverpool L69 3GA, UK.
Vijay AachiThe Royal Liverpool and Broadgreen University Hospital Trust, Liverpool L7 8XP, UK.
Bryony H LloydDepartment of Molecular and Clinical Cancer Medicine, University of Liverpool, Liverpool L69 3GA, UK.
Puthen V JitheshDepartment of Molecular and Clinical Cancer Medicine, University of Liverpool, Liverpool L69 3GA, UK.
John ArrandSchool of Cancer Sciences, University of Birmingham, Birmingham B15 2TT, UK.
Darren BartonSchool of Cancer Sciences, University of Birmingham, Birmingham B15 2TT, UK.
Jawaher AnsariBeatson West Scotland Cancer Centre, Glasgow G12 0YN, UK.
D Ross SibsonDepartment of Molecular and Clinical Cancer Medicine, University of Liverpool, Liverpool L69 3GA, UK.
Nicholas D JamesSchool of Cancer Sciences, University of Birmingham, Birmingham B15 2TT, UK.
University of Liverpool · GBUniversity of Birmingham · GBBeatson West of Scotland Cancer Centre · GBFoundation for Liver Research · GBRoyal Liverpool and Broadgreen University Hospital NHS Trust · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite advances in management, bladder cancer remains a major cause of cancer related complications. Characterisation of gene expression patterns in bladder cancer allows the identification of pathways involved in its pathogenesis, and may stimulate the development of novel therapies targeting these pathways. Between 2004 and 2005, cystoscopic bladder biopsies were obtained from 19 patients and 11 controls. These were subjected to whole transcript-based microarray analysis. Unsupervised hierarchical clustering was used to identify samples with similar expression profiles. Hypergeometric analysis was used to identify canonical pathways and curated networks having statistically significant enrichment of differentially expressed genes. Osteopontin (OPN) expression was validated by immunohistochemistry. Hierarchical clustering defined signatures, which differentiated between cancer and healthy tissue, muscle-invasive or non-muscle invasive cancer and healthy tissue, grade 1 and grade 3. Pathways associated with cell cycle and proliferation were markedly upregulated in muscle-invasive and grade 3 cancers. Genes associated with the classical complement pathway were downregulated in non-muscle invasive cancer. Osteopontin was markedly overexpressed in invasive cancer compared to healthy tissue. The present study contributes to a growing body of work on gene expression signatures in bladder cancer. The data support an important role for osteopontin in bladder cancer, and identify several pathways worthy of further investigation.

Indexed as

Gene Expression Regulation, NeoplasticMolecular Targeted TherapyAgedAged, 80 and overBiopsyCarcinomaCell CycleCell ProliferationCluster AnalysisComplement Pathway, ClassicalCystoscopyDown-RegulationFemaleGene Expression ProfilingHumansImmunohistochemistryOsteopontinSPP1 protein, human

Identifiers

PMID28259975
PMCPMC5363876
OpenAlexW573831242

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.