Evidence map›Paper›PMID 28257628›Full record

ArticleBMC microbiology2017

Functional and comparative genome analysis of novel virulent actinophages belonging to Streptomyces flavovirens.

A Sharaf, F Mercati, I Elmaghraby, R M Elbaz, E M Marei

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Genome Sequences of FiveGenome announcements · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 3 countries.

A SharafGenetic Department, Faculty of Agriculture, Ain Shams University, Cairo, 11241, Egypt. sharaf@paru.cas.cz.ORCID 0000-0002-3436-9290
F MercatiInstitute of Biosciences and Bioresources (IBBR), National Research Council (CNR) of Italy, 90129, Palermo, Italy.
I ElmaghrabyCentral Lab. of Organic Agriculture, Agricultural Research Center, Giza, 12619, Egypt.
R M ElbazBotany and Microbiology Department, Faculty of Science, Helwan University, Ain-Helwan, Cairo, 11970, Egypt.
E M MareiMicrobiology Department, Faculty of Agriculture, Ain Shams University, Cairo, 11241, Egypt.
Ain Shams University · EGCentral Laboratory for Agricultural Climate · EGHelwan University · EGInstitute of Biosciences and Bioresources · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNext Generation Sequencing (NGS) technologies provide exciting possibilities for whole genome sequencing of a plethora of organisms including bacterial strains and phages, with many possible applications in research and diagnostics. No Streptomyces flavovirens phages have been sequenced to date; there is therefore a lack in available information about S. flavovirens phage genomics. We report biological and physiochemical features and use NGS to provide the complete annotated genomes for two new strains (Sf1 and Sf3) of the virulent phage Streptomyces flavovirens, isolated from Egyptian soil samples.

resultsThe S. flavovirens phages (Sf1 and Sf3) examined in this study show higher adsorption rates (82 and 85%, respectively) than other actinophages, indicating a strong specificity to their host, and latent periods (15 and 30 min.), followed by rise periods of 45 and 30 min. As expected for actinophages, their burst sizes were 1.95 and 2.49 virions per mL. Both phages were stable and, as reported in previous experiments, showed a significant increase in their activity after sodium chloride (NaCl) and magnesium chloride (MgCl

conclusionThe results of this study provide the first physiological and genomic information for S. flavovirens phages and will be useful for pharmaceutical industries based on S. flavovirens and future phage evolution studies.

Indexed as

Amino Acid SequenceBacteriophagesBase SequenceBiological EvolutionCapsid ProteinsChloridesDNA, ViralEgyptGenes, ViralGenome, ViralGenomicsHigh-Throughput Nucleotide SequencingHost SpecificityMagnesium ChlorideOpen Reading FramesPhylogenyCapsid ProteinsChloridesDNA, ViralMagnesium ChlorideSodium ChlorideSoilViral Proteinszinc chlorideZinc CompoundsBacteriophageBiological stabilityComparative genomicsNGSWhole genome sequence

Identifiers

PMID28257628
PMCPMC5336643
OpenAlexW2592769577

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.