Evidence map›Paper›PMID 28257516›Full record

ArticlePLoS pathogens2017

Integrated systems biology analysis of KSHV latent infection reveals viral induction and reliance on peroxisome mediated lipid metabolism.

Zoi E Sychev, Alex Hu, Terri A DiMaio, Anthony Gitter, Nathan D Camp, William S Noble, Alejandro Wolf-Yadlin, Michael Lagunoff

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
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  4. Review
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  6. Article
  7. Review
  8. A viral Cyclin D homolog protein hijacks the metabolic stress sensor SESN2 to promote primary effusion lymphoma growth.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Review
  10. Review
  11. Understanding Metabolic Pathway Rewiring by Oncogenic Gamma Herpesvirus.Journal of microbiology and biotechnology · 2024
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Fenofibrate for COVID-19 and related complications as an approach to improve treatment outcomes: the missed key for Holy Grail.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Zoi E SychevMolecular and Cellular Biology Program, University of Washington, Seattle, Washington, United States of America.
Alex HuDepartment of Genome Science, University of Washington, Seattle, Washington, United States of America.
Terri A DiMaioDepartment of Microbiology, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0002-8670-2884
Anthony GitterDepartment of Biostatistics and Medical Informatics, University of Wisconsin-Madison and Morgridge Institute for Research, Madison, Wisconsin, USA.ORCID 0000-0002-5324-9833
Nathan D CampDepartment of Genome Science, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0002-1216-5262
William S NobleDepartment of Genome Science, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0001-7283-4715
Alejandro Wolf-YadlinDepartment of Genome Science, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0003-2909-3880
Michael LagunoffDepartment of Microbiology, University of Washington, Seattle, Washington, United States of America.
University of Washington · USUniversity of Wisconsin–Madison · US

Funding

Interdisciplinary Tranining in Cancer ResearchT32CA080416 · NCI · UNIVERSITY OF WASHINGTON · PI STODDARD, BARRY L. · 1998 to 2023
$9.7M
Oral pathogenesis and host interactions of KSHV infection (P01 Parent Level)P01DE021954 · NIDCR · SEATTLE CHILDREN'S HOSPITAL · PI ROSE, TIMOTHY M · 2011 to 2015
$7.7M
KSHV alteration of cellular metabolismR01CA189986 · NCI · UNIVERSITY OF WASHINGTON · PI LAGUNOFF, MICHAEL · 2015 to 2024
$3.7M
Interactions of KSHV and endothelial cellsR01CA097934 · NCI · UNIVERSITY OF WASHINGTON · PI LAGUNOFF, MICHAEL · 2003 to 2012
$2.7M
NCI NIH HHS R01 CA097934NCI NIH HHS R01 CA189986NCI NIH HHS T32 CA080416NIDCR NIH HHS P01 DE021954
6 · The paper itself

Abstract

Kaposi's Sarcoma associated Herpesvirus (KSHV), an oncogenic, human gamma-herpesvirus, is the etiological agent of Kaposi's Sarcoma the most common tumor of AIDS patients world-wide. KSHV is predominantly latent in the main KS tumor cell, the spindle cell, a cell of endothelial origin. KSHV modulates numerous host cell-signaling pathways to activate endothelial cells including major metabolic pathways involved in lipid metabolism. To identify the underlying cellular mechanisms of KSHV alteration of host signaling and endothelial cell activation, we identified changes in the host proteome, phosphoproteome and transcriptome landscape following KSHV infection of endothelial cells. A Steiner forest algorithm was used to integrate the global data sets and, together with transcriptome based predicted transcription factor activity, cellular networks altered by latent KSHV were predicted. Several interesting pathways were identified, including peroxisome biogenesis. To validate the predictions, we showed that KSHV latent infection increases the number of peroxisomes per cell. Additionally, proteins involved in peroxisomal lipid metabolism of very long chain fatty acids, including ABCD3 and ACOX1, are required for the survival of latently infected cells. In summary, novel cellular pathways altered during herpesvirus latency that could not be predicted by a single systems biology platform, were identified by integrated proteomics and transcriptomics data analysis and when correlated with our metabolomics data revealed that peroxisome lipid metabolism is essential for KSHV latent infection of endothelial cells.

Indexed as

Cells, CulturedCell SeparationEndothelial CellsFlow CytometryHerpesvirus 8, HumanHost-Parasite InteractionsHumansLipid MetabolismMass SpectrometryMicroscopy, ConfocalPeroxisomesRNA, Small InterferingSarcoma, KaposiSystems BiologyTransfectionVirus ActivationRNA, Small Interfering

Identifiers

PMID28257516
PMCPMC5352148
OpenAlexW2593282347

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.