Evidence map›Paper›PMID 28256633›Full record

ArticleScientific reports2017

Transcript profiling of two potato cultivars during glycoalkaloid-inducing treatments shows differential expression of genes in sterol and glycoalkaloid metabolism.

Nurun Nahar, Erik Westerberg, Usman Arif, Alexandre Huchelmann, Alexandra Olarte Guasca, Lisa Beste, Kerstin Dalman, Paresh C Dutta, Lisbeth Jonsson, Folke Sitbon

Open access · goldAbstract readComparative Study
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.1field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

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  14. Frontiers in plant science · 2022
    Review
  15. Review
  16. Sustainable Use of Bioactive Compounds fromMolecules (Basel, Switzerland) · 2021
    Review
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Nurun NaharDepartment of Plant Biology, Uppsala BioCenter, Swedish University of Agricultural Sciences, and Linnean Centre for Plant Biology, P. O. Box 7080, 75007 Uppsala, Sweden.
Erik WesterbergDepartment of Plant Biology, Uppsala BioCenter, Swedish University of Agricultural Sciences, and Linnean Centre for Plant Biology, P. O. Box 7080, 75007 Uppsala, Sweden.
Usman ArifDepartment of Plant Biology, Uppsala BioCenter, Swedish University of Agricultural Sciences, and Linnean Centre for Plant Biology, P. O. Box 7080, 75007 Uppsala, Sweden.
Alexandre HuchelmannDepartment of Plant Biology, Uppsala BioCenter, Swedish University of Agricultural Sciences, and Linnean Centre for Plant Biology, P. O. Box 7080, 75007 Uppsala, Sweden.
Alexandra Olarte GuascaDepartment of Plant Biology, Uppsala BioCenter, Swedish University of Agricultural Sciences, and Linnean Centre for Plant Biology, P. O. Box 7080, 75007 Uppsala, Sweden.
Lisa BesteDepartment of Plant Biology, Uppsala BioCenter, Swedish University of Agricultural Sciences, and Linnean Centre for Plant Biology, P. O. Box 7080, 75007 Uppsala, Sweden.
Kerstin DalmanDepartment of Plant Biology, Uppsala BioCenter, Swedish University of Agricultural Sciences, and Linnean Centre for Plant Biology, P. O. Box 7080, 75007 Uppsala, Sweden.
Paresh C DuttaDepartment of Food Science, Uppsala BioCenter, Swedish University of Agricultural Sciences, P. O. Box 7051, 75007 Uppsala, Sweden.
Lisbeth JonssonDepartment of Ecology, Environment and Plant Sciences, Stockholm University, 10691 Stockholm, Sweden.
Folke SitbonDepartment of Plant Biology, Uppsala BioCenter, Swedish University of Agricultural Sciences, and Linnean Centre for Plant Biology, P. O. Box 7080, 75007 Uppsala, Sweden.
Swedish University of Agricultural Sciences · SEStockholm University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Steroidal glycoalkaloids (SGA) are sterol-derived neurotoxic defence substances present in several members of the Solanaceae. In the potato (Solanum tuberosum), high SGA levels may render tubers harmful for consumption. Tuber SGA levels depend on genetic factors, and can increase as a response to certain stresses and environmental conditions. To identify genes underlying the cultivar variation in tuber SGA levels, we investigated two potato cultivars differing in their SGA accumulation during wounding or light exposure; two known SGA-inducing treatments. Using microarray analysis coupled to sterol and SGA quantifications, we identified a small number of differentially expressed genes that were associated with increased SGA levels. Two of these genes, encoding distinct types of sterol Δ

Indexed as

Gene Expression ProfilingAlkaloidsLightMicroarray AnalysisSolanum tuberosumSterolsAlkaloidsSterols

Identifiers

PMID28256633
PMCPMC5335668
OpenAlexW2593497976

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.