Evidence map›Paper›PMID 28256610›Full record

ArticleScientific reports2017

The genome of Leishmania adleri from a mammalian host highlights chromosome fission in Sauroleishmania.

Simone Coughlan, Peter Mulhair, Mandy Sanders, Gabriele Schonian, James A Cotton, Tim Downing

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
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  3. Unraveling the Genome Diversity ofLife (Basel, Switzerland) · 2025
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  7. Discovery of the vector of visceral leishmaniasis,Current research in parasitology & vector-borne diseases · 2023
    Article
  8. Review
  9. Article
  10. Development of VariousMicroorganisms · 2021
    Article
  11. Review
  12. Article
  13. Reptile vector-borne diseases of zoonotic concern.International journal for parasitology. Parasites and wildlife · 2021
    Review
  14. Genome Analysis ofGenes · 2021
    Article
  15. Article
  16. Article
  17. Analysis of the IGS rRNA Region and Applicability forJournal of parasitology research · 2020
    Article
  18. Article
  19. Genes · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Simone CoughlanSchool of Mathematics, Applied Mathematics and Statistics, National University of Ireland, Galway, Ireland.
Peter MulhairSchool of Biotechnology, Dublin City University, Dublin, Ireland.
Mandy SandersWellcome Trust Sanger Institute, Hinxton, UK.
Gabriele SchonianCharite University Medicine, Berlin, Germany.
James A CottonWellcome Trust Sanger Institute, Hinxton, UK.
Tim DowningSchool of Mathematics, Applied Mathematics and Statistics, National University of Ireland, Galway, Ireland.
Ollscoil na Gaillimhe – University of Galway · IEWellcome Sanger Institute · GBCharité - Universitätsmedizin Berlin · DEDublin City University · IE

Funding

Wellcome TrustWellcome Trust 098051
6 · The paper itself

Abstract

Control of pathogens arising from humans, livestock and wild animals can be enhanced by genome-based investigation. Phylogenetically classifying and optimal construction of these genomes using short sequence reads are key to this process. We examined the mammal-infecting unicellular parasite Leishmania adleri belonging to the lizard-infecting Sauroleishmania subgenus. L. adleri has been associated with cutaneous disease in humans, but can be asymptomatic in wild animals. We sequenced, assembled and investigated the L. adleri genome isolated from an asymptomatic Ethiopian rodent (MARV/ET/75/HO174) and verified it as L. adleri by comparison with other Sauroleishmania species. Chromosome-level scaffolding was achieved by combining reference-guided with de novo assembly followed by extensive improvement steps to produce a final draft genome with contiguity comparable with other references. L. tarentolae and L. major genome annotation was transferred and these gene models were manually verified and improved. This first high-quality draft Leishmania adleri reference genome is also the first Sauroleishmania genome from a non-reptilian host. Comparison of the L. adleri HO174 genome with those of L. tarentolae Parrot-TarII and lizard-infecting L. adleri RLAT/KE/1957/SKINK-7 showed extensive gene amplifications, pervasive aneuploidy, and fission of chromosomes 30 and 36. There was little genetic differentiation between L. adleri extracted from mammals and reptiles, highlighting challenges for leishmaniasis surveillance.

Indexed as

Genome, BacterialHost-Pathogen InteractionsAnimalsChromosomesComputational BiologyDNA Copy Number VariationsGenomicsGenotypeHumansLeishmaniaLeishmaniasisLizardsMammalsMolecular Sequence AnnotationPhylogenyPolymorphism, Single Nucleotide

Identifiers

PMID28256610
PMCPMC5335649
OpenAlexW2592523451

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.