Evidence map›Paper›PMID 28256579›Full record

ArticleScientific reports2017

Proline dehydrogenase from Thermus thermophilus does not discriminate between FAD and FMN as cofactor.

Mieke M E Huijbers, Marta Martínez-Júlvez, Adrie H Westphal, Estela Delgado-Arciniega, Milagros Medina, Willem J H van Berkel

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Structural Biology of Proline Catabolic Enzymes.Antioxidants & redox signaling · 2019
    Review
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Mieke M E HuijbersLaboratory of Biochemistry, Wageningen University &Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands.
Marta Martínez-JúlvezDepartment of Biochemistry and Molecular Cell Biology and Institute for Biocomputation and Physics of Complex Systems, University of Zaragoza, Pedro Cerbuna 12, 50009, Zaragoza, Spain.
Adrie H WestphalLaboratory of Biochemistry, Wageningen University &Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands.
Estela Delgado-ArciniegaLaboratory of Biochemistry, Wageningen University &Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands.
Milagros MedinaDepartment of Biochemistry and Molecular Cell Biology and Institute for Biocomputation and Physics of Complex Systems, University of Zaragoza, Pedro Cerbuna 12, 50009, Zaragoza, Spain.
Willem J H van BerkelLaboratory of Biochemistry, Wageningen University &Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands.
Wageningen University & Research · NLUniversidad de Zaragoza · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Flavoenzymes are versatile biocatalysts containing either FAD or FMN as cofactor. FAD often binds to a Rossmann fold, while FMN prefers a TIM-barrel or flavodoxin-like fold. Proline dehydrogenase is denoted as an exception: it possesses a TIM barrel-like fold while binding FAD. Using a riboflavin auxotrophic Escherichia coli strain and maltose-binding protein as solubility tag, we produced the apoprotein of Thermus thermophilus ProDH (MBP-TtProDH). Remarkably, reconstitution with FAD or FMN revealed that MBP-TtProDH has no preference for either of the two prosthetic groups. Kinetic parameters of both holo forms are similar, as are the dissociation constants for FAD and FMN release. Furthermore, we show that the holo form of MBP-TtProDH, as produced in E. coli TOP10 cells, contains about three times more FMN than FAD. In line with this flavin content, the crystal structure of TtProDH variant ΔABC, which lacks helices αA, αB and αC, shows no electron density for an AMP moiety of the cofactor. To the best of our knowledge, this is the first example of a flavoenzyme that does not discriminate between FAD and FMN as cofactor. Therefore, classification of TtProDH as an FAD-binding enzyme should be reconsidered.

Indexed as

Bacterial ProteinsCrystallography, X-RayEscherichia coliFlavin-Adenine DinucleotideFlavin MononucleotideHoloenzymesKineticsMaltose-Binding ProteinsModels, MolecularMolecular StructureProline OxidaseProtein ConformationRecombinant ProteinsThermus thermophilusBacterial ProteinsFlavin-Adenine DinucleotideFlavin MononucleotideHoloenzymesMaltose-Binding ProteinsProline OxidaseRecombinant Proteins

Identifiers

PMID28256579
PMCPMC5335563
OpenAlexW2593631439

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.