ArticleScientific reports2017
Genetic variation architecture of mitochondrial genome reveals the differentiation in Korean landrace and weedy rice.
Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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12 citing papers in PubMed.
- Comparative analysis of the complete multi-chromosomal mitogenome of an antitussive herb Fritillaria unibracteata.BMC genomics · 2026Article
- The complete mitochondrial genome and phylogenetic analysis ofFrontiers in plant science · 2026Article
- Article
- Complete mitochondrial genome assembly ofFrontiers in plant science · 2024Article
- Assembly and comparative analysis of the complete mitochondrial genome of Trigonella foenum-graecum L.BMC genomics · 2023Article
- Mitochondrial markers differentiate two distinct phylogenetic groups in indigenous rice landraces of northeast India: an evolutionary insight.Journal of genetics · 2023Article
- Super-Mitobarcoding in Plant Species Identification? It Can Work! The Case of Leafy Liverworts Belonging to the GenusInternational journal of molecular sciences · 2022Article
- Whole-Genome Sequencing and RNA-Seq Reveal Differences in Genetic Mechanism for Flowering Response between Weedy Rice and Cultivated Rice.International journal of molecular sciences · 2022Article
- Development of an inclusive 580K SNP array and its application for genomic selection and genome-wide association studies in rice.Frontiers in plant science · 2022Article
- Whole-genome sequencing reveals uniqueness of black-hulled and straw-hulled weedy rice genomes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Signatures of differential selection in chloroplast genome between japonica and indica.Rice (New York, N.Y.) · 2019Article
- Genome-wide discovery of DNA polymorphisms by whole genome sequencing differentiates weedy and cultivated rice.Scientific reports · 2018Article
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3 authors.
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Abstract
Mitochondrial genome variations have been detected despite the overall conservation of this gene content, which has been valuable for plant population genetics and evolutionary studies. Here, we describe mitochondrial variation architecture and our performance of a phylogenetic dissection of Korean landrace and weedy rice. A total of 4,717 variations across the mitochondrial genome were identified adjunct with 10 wild rice. Genetic diversity assessment revealed that wild rice has higher nucleotide diversity than landrace and/or weedy, and landrace rice has higher diversity than weedy rice. Genetic distance was suggestive of a high level of breeding between landrace and weedy rice, and the landrace showing a closer association with wild rice than weedy rice. Population structure and principal component analyses showed no obvious difference in the genetic backgrounds of landrace and weedy rice in mitochondrial genome level. Phylogenetic, population split, and haplotype network evaluations were suggestive of independent origins of the indica and japonica varieties. The origin of weedy rice is supposed to be more likely from cultivated rice rather than from wild rice in mitochondrial genome level.
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