Evidence map›Paper›PMID 28256221›Full record

ArticleBiophysical journal2017

Unfolding of CPR3 Gets Initiated at the Active Site and Proceeds via Two Intermediates.

Vaibhav Kumar Shukla, Jai Shankar Singh, Neha Vispute, Basir Ahmad, Ashutosh Kumar, Ramakrishna V Hosur

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Vaibhav Kumar ShuklaUM-DAE-Centre for Excellence in Basic Sciences, University of Mumbai, Kalina Campus, Mumbai, India.
Jai Shankar SinghDepartment of Biosciences and Bioengineering, Indian Institute of Technology, Mumbai, India.
Neha VisputeUM-DAE-Centre for Excellence in Basic Sciences, University of Mumbai, Kalina Campus, Mumbai, India.
Basir AhmadUM-DAE-Centre for Excellence in Basic Sciences, University of Mumbai, Kalina Campus, Mumbai, India.
Ashutosh KumarDepartment of Biosciences and Bioengineering, Indian Institute of Technology, Mumbai, India. Electronic address: ashutoshk@iitb.ac.in.
Ramakrishna V HosurUM-DAE-Centre for Excellence in Basic Sciences, University of Mumbai, Kalina Campus, Mumbai, India; Department of Chemical Sciences, Tata Institute of Fundamental Research, Mumbai, India. Electronic address: hosur@tifr.res.in.
University of Mumbai · INIndian Institute of Technology Bombay · INTata Institute of Fundamental Research · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cyclophilin catalyzes the ubiquitous process "peptidyl-prolyl cis-trans isomerization," which plays a key role in protein folding, regulation, and function. Here, we present a detailed characterization of the unfolding of yeast mitochondrial cyclophilin (CPR3) induced by urea. It is seen that CPR3 unfolding is reversible and proceeds via two intermediates, I1 and I2. The I1 state has native-like secondary structure and shows strong anilino-8-naphthalenesulphonate binding due to increased exposure of the solvent-accessible cluster of non-polar groups. Thus, it has some features of a molten globule. The I2 state is more unfolded, but it retains some residual secondary structure, and shows weak anilino-8-naphthalenesulphonate binding. Chemical shift perturbation analysis by

Indexed as

Catalytic DomainAmino Acid SequenceCyclophilinsModels, MolecularProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein UnfoldingSchizosaccharomyces pombe ProteinsUreaCyclophilinscyp3 protein, S pombeSchizosaccharomyces pombe ProteinsUrea

Identifiers

PMID28256221
PMCPMC5340121
OpenAlexW2593578146

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.