Evidence map›Paper›PMID 28255716›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2017

Systems Imaging of the Immune Synapse.

Rachel Ambler, Xiangtao Ruan, Robert F Murphy, Christoph Wülfing

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Rachel AmblerSchool of Cellular and Molecular Medicine, University of Bristol, Bristol, BS8 1TD, UK.
Xiangtao RuanComputational Biology Department, School of Computer Science, Carnegie Mellon University, 7723 Gates-Hillman Center, Pittsburgh, PA, 15213, USA.
Robert F MurphyComputational Biology Department, School of Computer Science, Carnegie Mellon University, 7723 Gates-Hillman Center, Pittsburgh, PA, 15213, USA. murphy@cmu.edu.
Christoph WülfingSchool of Cellular and Molecular Medicine, University of Bristol, Bristol, BS8 1TD, UK. christoph.wuelfing@bristol.ac.uk.

Funding

TrainingP41GM103712 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FAEDER, JAMES · 2012 to 2021
$16.3M
NIGMS NIH HHS P41 GM103712
6 · The paper itself

Abstract

Three-dimensional live cell imaging of the interaction of T cells with antigen-presenting cells (APCs) visualizes the subcellular distributions of signaling intermediates during T cell activation at thousands of resolved positions within a cell. These information-rich maps of local protein concentrations are a valuable resource in understanding T cell signaling. Here, we describe a protocol for the efficient acquisition of such imaging data and their computational processing to create four-dimensional maps of local concentrations. This protocol allows quantitative analysis of T cell signaling as it occurs inside live cells with resolution in time and space across thousands of cells.

Indexed as

AnimalsImage Processing, Computer-AssistedImmunological SynapsesMiceMice, TransgenicMicroscopy, FluorescenceT-LymphocytesComputational image analysisImmunological synapseLive cell imagingSpatiotemporal distributionsT cell activation

Identifiers

PMID28255716
PMCPMC5338467

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.