Evidence map›Paper›PMID 28254381›Full record

ArticleJournal of structural biology2017

Vitrification after multiple rounds of sample application and blotting improves particle density on cryo-electron microscopy grids.

Joost Snijder, Andrew J Borst, Annie Dosey, Alexandra C Walls, Anika Burrell, Vijay S Reddy, Justin M Kollman, David Veesler

Abstract read
In one paragraph

Article in Journal of structural biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

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  14. Structure of the γ-tubulin ring complex-capped microtubule.Nature structural & molecular biology · 2024
    Article
  15. Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Joost SnijderDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Andrew J BorstDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Annie DoseyDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Alexandra C WallsDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Anika BurrellDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Vijay S ReddyDepartment of Integrative Computational and Structural Biology, The Scripps Research Institute, La Jolla, CA, USA.
Justin M KollmanDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
David VeeslerDepartment of Biochemistry, University of Washington, Seattle, WA, USA. Electronic address: dveesler@uw.edu.

Funding

TRAINING IN MOLECULAR BIOPHYSICST32GM008268 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M, ZHENG, NING · 1988 to 2023
$8.6M
X-ray diffraction analysis of human adenovirusesR01AI070771 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI REDDY, VIJAY S · 2008 to 2015
$3.3M
The Structure and Function of Metabolic FilamentsR01GM118396 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M · 2016 to 2023
$2.9M
Structural Studies of Coronavirus Fusion ProteinsR01GM120553 · NIGMS · UNIVERSITY OF WASHINGTON · PI VEESLER, DAVID · 2016 to 2020
$1.7M
NIAID NIH HHS R01 AI070771NIGMS NIH HHS R01 GM118396NIGMS NIH HHS R01 GM120553NIGMS NIH HHS T32 GM008268
6 · The paper itself

Abstract

Single particle cryo-electron microscopy (cryoEM) is becoming widely adopted as a tool for structural characterization of biomolecules at near-atomic resolution. Vitrification of the sample to obtain a dense distribution of particles within a single field of view remains a major bottleneck for the success of such experiments. Here, we describe a simple and cost-effective method to increase the density of frozen-hydrated particles on grids with holey carbon support films. It relies on performing multiple rounds of sample application and blotting prior to plunge freezing in liquid ethane. We show that this approach is generally applicable and significantly increases particle density for a range of samples, such as small protein complexes, viruses and filamentous assemblies. The method is versatile, easy to implement, minimizes sample requirements and can enable characterization of samples that would otherwise resist structural studies using single particle cryoEM.

Indexed as

VitrificationCryoelectron MicroscopyFreezingMacromolecular SubstancesMethodsSpecimen HandlingMacromolecular SubstancesCryo-electron microscopySingle particleVitrification

Identifiers

PMID28254381
PMCPMC5400742

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.