Evidence map›Paper›PMID 28253956›Full record

ReviewMethods in enzymology2017

Measurement of the Activity of the Atg4 Cysteine Proteases.

M Li, Y Fu, Z Yang, X-M Yin

Abstract readReview
In one paragraph

Review in Methods in enzymology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact, top 71% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 0 citations in OpenAlex.

  1. Article
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  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
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  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

M LiSchool of Pharmaceutical Sciences, Sun Yat-Sen University, Guangzhou, Guangdong, China. Electronic address: limin65@mail.sysu.edu.cn.
Y FuSchool of Pharmaceutical Sciences, Sun Yat-Sen University, Guangzhou, Guangdong, China.
Z YangSchool of Pharmaceutical Sciences, Sun Yat-Sen University, Guangzhou, Guangdong, China.
X-M YinIndiana University School of Medicine, Indianapolis, IN, United States. Electronic address: xmyin@iupui.edu.
Sun Yat-sen University · CNIndiana University – Purdue University Indianapolis · US

Funding

Signal integration of the death receptor pathwaysR01CA083817 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI YIN, XIAO-MING · 2000 to 2010
$2.1M
The dynamics and mechanisms of autophagy in ethanol - induced liver pathogenesisR01AA021751 · NIAAA · INDIANA UNIVERSITY INDIANAPOLIS · PI TSUKAMOTO, HIDEKAZU, YIN, XIAO-MING · 2013 to 2017
$2.1M
The impact of growth modulation of liver carcinogenesisR01CA111456 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI YIN, XIAO-MING · 2005 to 2009
$1.4M
High-Content Cell-Based Screening for Modulators of AutophagyR03MH083154 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI YIN, XIAO-MING · 2007 to 2007
$25k
NCI NIH HHS R01 CA083817NCI NIH HHS R01 CA111456NIAAA NIH HHS R01 AA021751NIMH NIH HHS R03 MH083154
6 · The paper itself

Abstract

While only one Atg4 is present in yeast, there are four Atg4 homologues in human and in mouse with different substrate specificities and catalytic efficiencies. The molecule Atg4 is a type of cysteine protease, and is known for its crucial roles in cleavage of the Atg8 family proteins before they can be conjugated to phospholipids, and also in cleavage of the conjugated Atg8 molecules from the membrane, a process known as deconjugation. Both processes are required for the maximal efficiency in autophagosome biogenesis. Atg4 could thus be a target for intervention of the autophagy process. It is thus important to measure Atg4 activity to determine and to modulate the autophagy function. Here, we review the catalytic functions and regulatory mechanisms of human Atg4 proteases and discuss the methodology for analyzing Atg4 activity in details.

Indexed as

Autophagy-Related Protein 8 FamilyAutophagy-Related ProteinsCysteine EndopeptidasesFluorescence Resonance Energy TransferHigh-Throughput Screening AssaysHumansKineticsMolecular BiologyProtein ConformationProtein EngineeringRecombinant ProteinsATG4A protein, humanAutophagy-Related Protein 8 FamilyAutophagy-Related ProteinsCysteine EndopeptidasesRecombinant ProteinsAtg4Atg8Enzymatic kineticsFRETGABARAPGATE-16High-throughput screeningLC3

Identifiers

PMID28253956
PMCPMC5582973
OpenAlexW2560729935

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.