Evidence map›Paper›PMID 28251929›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Transposon insertional mutagenesis in mice identifies human breast cancer susceptibility genes and signatures for stratification.

Liming Chen, Piroon Jenjaroenpun, Andrea Mun Ching Pillai, Anna V Ivshina, Ghim Siong Ow, Motakis Efthimios, Tang Zhiqun, Tuan Zea Tan, Song-Choon Lee, Keith Rogers and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 43 citations in OpenAlex.

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  9. WNK1 collaborates with TGF-β in endothelial cell junction turnover and angiogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  15. WNK1 in Malignant Behaviors: A Potential Target for Cancer?Frontiers in cell and developmental biology · 2022
    Review
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 5 countries.

Liming ChenInstitute of Molecular and Cell Biology, Singapore 138673.
Piroon JenjaroenpunDivision of Genome and Gene Expression Data Analysis, Bioinformatics Institute, Singapore 138671.
Andrea Mun Ching PillaiInstitute of Molecular and Cell Biology, Singapore 138673.
Anna V IvshinaDivision of Genome and Gene Expression Data Analysis, Bioinformatics Institute, Singapore 138671.
Ghim Siong OwDivision of Genome and Gene Expression Data Analysis, Bioinformatics Institute, Singapore 138671.
Motakis EfthimiosDivision of Genome and Gene Expression Data Analysis, Bioinformatics Institute, Singapore 138671.
Tang ZhiqunDivision of Genome and Gene Expression Data Analysis, Bioinformatics Institute, Singapore 138671.
Tuan Zea TanCancer Science Institute of Singapore, National University of Singapore, Singapore 117599.ORCID 0000-0001-6624-1593
Song-Choon LeeInstitute of Molecular and Cell Biology, Singapore 138673.
Keith RogersInstitute of Molecular and Cell Biology, Singapore 138673.
Jerrold M WardInstitute of Molecular and Cell Biology, Singapore 138673.
Seiichi MoriJapanese Foundation of Cancer Research, Tokyo 1358550, Japan.
David J AdamsExperimental Cancer Genetics, Hinxton Campus, Wellcome Trust Sanger Institute, Cambridge CB10 1HH, United Kingdom.
Nancy A JenkinsInstitute of Molecular and Cell Biology, Singapore 138673.
Neal G CopelandInstitute of Molecular and Cell Biology, Singapore 138673; vladimirk@bii.a-star.edu.sg bchtjp@nus.edu.sg ncopeland@houstonmethodist.org.
Kenneth Hon-Kim BanInstitute of Molecular and Cell Biology, Singapore 138673.
Vladimir A KuznetsovDivision of Genome and Gene Expression Data Analysis, Bioinformatics Institute, Singapore 138671; vladimirk@bii.a-star.edu.sg bchtjp@nus.edu.sg ncopeland@houstonmethodist.org.
Jean Paul ThieryInstitute of Molecular and Cell Biology, Singapore 138673; vladimirk@bii.a-star.edu.sg bchtjp@nus.edu.sg ncopeland@houstonmethodist.org.
Bioinformatics Institute · SGInstitute of Molecular and Cell Biology · SGNational University of Singapore · SGMethodist Hospital · USJapanese Foundation For Cancer Research · JPNanjing Normal University · CNNanyang Technological University · SGWellcome Sanger Institute · GB

Funding

Cancer Research UK 13031
6 · The paper itself

Abstract

Robust prognostic gene signatures and therapeutic targets are difficult to derive from expression profiling because of the significant heterogeneity within breast cancer (BC) subtypes. Here, we performed forward genetic screening in mice using Sleeping Beauty transposon mutagenesis to identify candidate BC driver genes in an unbiased manner, using a stabilized N-terminal truncated β-catenin gene as a sensitizer. We identified 134 mouse susceptibility genes from 129 common insertion sites within 34 mammary tumors. Of these, 126 genes were orthologous to protein-coding genes in the human genome (hereafter, human BC susceptibility genes, hBCSGs), 70% of which are previously reported cancer-associated genes, and ∼16% are known BC suppressor genes. Network analysis revealed a gene hub consisting of E1A binding protein P300 (

Indexed as

DNA Transposable ElementsGenetic Association StudiesGenetic Predisposition to DiseaseMutagenesis, InsertionalAnimalsBreast NeoplasmsCell Line, TumorCell Transformation, NeoplasticComputational BiologyDisease Models, AnimalFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticGene Regulatory NetworksHigh-Throughput Nucleotide SequencingHumansDNA Transposable Elementsbreast cancercancer susceptibilityprognostic gene signatureSleeping Beautysurvival prediction analysis

Identifiers

PMID28251929
PMCPMC5358385
OpenAlexW2594294602

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.