Evidence map›Paper›PMID 28251412›Full record

ArticleJournal of molecular modeling2017

Insight into the orientational versatility of steroid substrates-a docking and molecular dynamics study of a steroid receptor and steroid monooxygenase.

Anna Panek, Alina Świzdor, Natalia Milecka-Tronina, Jarosław J Panek

Open access · hybridAbstract read
In one paragraph

Article in Journal of molecular modeling, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Anna PanekDepartment of Chemistry, Wrocław University of Environmental and Life Sciences, C. K. Norwida 25, 50-375, Wrocław, Poland.
Alina ŚwizdorDepartment of Chemistry, Wrocław University of Environmental and Life Sciences, C. K. Norwida 25, 50-375, Wrocław, Poland.
Natalia Milecka-TroninaDepartment of Chemistry, Wrocław University of Environmental and Life Sciences, C. K. Norwida 25, 50-375, Wrocław, Poland.
Jarosław J PanekFaculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383, Wrocław, Poland. jaroslaw.panek@chem.uni.wroc.pl.
Wroclaw University of Environmental and Life Sciences · PLUniversity of Wrocław · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Numerous steroids are essential plant, animal, and human hormones. The medical and industrial applications of these hormones require the identification of new synthetic routes, including biotransformations. The metabolic fate of a steroid can be complicated; it may be transformed into a variety of substituted derivatives. This may be because a steroid molecule can adopt several possible orientations in the binding pocket of a receptor or an enzyme. The present study, based on docking and molecular dynamics, shows that it is indeed possible for a steroid molecule to bind to a receptor binding site in two or more orientations (normal, head-to-tail reversed, upside down). Three steroids were considered: progesterone, dehydroepiandrosterone, and 7-oxo-dehydroepiandrosterone. Two proteins were employed as hosts: the human mineralocorticoid receptor and a bacterial Baeyer-Villiger monooxygenase. When the steroids were in nonstandard orientations, the estimated binding strength was found to be only moderately diminished and the network of hydrogen bonds between the steroid and the host was preserved.

Indexed as

Binding SitesBiotransformationDehydroepiandrosteroneHumansHydrogen BondingMolecular Docking SimulationMolecular Dynamics SimulationProgesteroneProtein BindingReceptors, MineralocorticoidSteroid HydroxylasesSubstrate Specificity7-oxodehydroepiandrosteroneDehydroepiandrosteroneProgesteroneReceptors, MineralocorticoidSteroid HydroxylasesBaeyer–Villiger monooxygenaseDHEAMolecular dockingMolecular dynamicsProgesteroneSteroids

Identifiers

PMID28251412
PMCPMC5332494
OpenAlexW2594154816

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.