Evidence map›Paper›PMID 28251348›Full record

ArticleExtremophiles : life under extreme conditions2017

Redox regulation of SurR by protein disulfide oxidoreductase in Thermococcus onnurineus NA1.

Jae Kyu Lim, Hae-Chang Jung, Sung Gyun Kang, Hyun Sook Lee

Abstract read
PubMed Publisher
In one paragraph

Article in Extremophiles : life under extreme conditions, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. NADPApplied and environmental microbiology · 2023
    Article
  4. Review
  5. Article
  6. Article
  7. Redox and Thiols in Archaea.Antioxidants (Basel, Switzerland) · 2020
    Review
  8. Direct Electron Transfer between theApplied and environmental microbiology · 2020
    Article
  9. Methionine Sulfoxide Reductases of Archaea.Antioxidants (Basel, Switzerland) · 2018
    Review
  10. Gene regulation of two ferredoxin:NADPExtremophiles : life under extreme conditions · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jae Kyu LimMarine Biotechnology Research Division, Korea Institute of Ocean Science and Technology, Ansan, 15627, Republic of Korea.
Hae-Chang JungMarine Biotechnology Research Division, Korea Institute of Ocean Science and Technology, Ansan, 15627, Republic of Korea.
Sung Gyun KangMarine Biotechnology Research Division, Korea Institute of Ocean Science and Technology, Ansan, 15627, Republic of Korea. sgkang@kiost.ac.kr.
Hyun Sook LeeMarine Biotechnology Research Division, Korea Institute of Ocean Science and Technology, Ansan, 15627, Republic of Korea. leeh522@kiost.ac.kr.ORCID http://orcid.org/0000-0002-5092-5285
Korea Institute of Ocean Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein disulfide oxidoreductases are redox enzymes that catalyze thiol-disulfide exchange reactions. These enzymes include thioredoxins, glutaredoxins, protein disulfide isomerases, disulfide bond formation A (DsbA) proteins, and Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) homologues. In the genome of a hyperthermophilic archaeon, Thermococcus onnurineus NA1, the genes encoding one PfPDO homologue (TON_0319, Pdo) and three more thioredoxin- or glutaredoxin-like proteins (TON_0470, TON_0472, TON_0834) were identified. All except TON_0470 were recombinantly expressed and purified. Three purified proteins were reduced by a thioredoxin reductase (TrxR), indicating that each protein can form redox complex with TrxR. SurR, a transcription factor involved in the sulfur response, was tested for a protein target of a TrxR-redoxin system and only Pdo was identified to be capable of catalyzing the reduction of SurR. Electromobility shift assay demonstrated that SurR reduced by the TrxR-Pdo system could bind to the DNA probe with the SurR-binding motif, GTTttgAAC. In this study, we present the TrxR-Pdo couple as a redox-regulator for SurR in T. onnurineus NA1.

Indexed as

Archaeal ProteinsOxidation-ReductionProtein BindingSequence HomologySulfurThermococcusThioredoxin-Disulfide ReductaseArchaeal ProteinsSulfurThioredoxin-Disulfide ReductaseProtein disulfide oxidoreductaseRedox systemSurRThermococcus onnurineus NA1Thioredoxin reductase

Identifiers

PMID28251348
OpenAlexW2593964037

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.