ArticlePloS one2017
Genome-wide characterization and expression profiling of HD-Zip gene family related to abiotic stress in cassava.
Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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21 citing papers in PubMed, 52 citations in OpenAlex.
- Genome-Wide Identification and Expression Profiling of HD-Zip Family Genes in Flax (Current issues in molecular biology · 2026Article
- Genome-wide identification of theFrontiers in plant science · 2026Article
- Genome-wide characterization and their roles in abiotic stress responses of HD-Zip transcription factors in pepper.BMC plant biology · 2025Article
- Domain characteristics, classification and expression profiles in response to various abiotic stresses of four HD-Zip subfamilies in tea plant.BMC plant biology · 2025Article
- Genome-wide characterization and expression profiling of the HD-ZIP gene family in Acoraceae under salinity and cold stress.Frontiers in plant science · 2024Article
- Genome-wide identification and expression analysis of heat shock protein gene family in cassava.The plant genome · 2023Article
- Superoxide dismutase gene family in cassava revealed their involvement in environmental stress via genome-wide analysis.iScience · 2023Article
- Molecular and biochemical responses of sesame (Frontiers in plant science · 2023Article
- Article
- Identification and Characterization of the HD-Zip Gene Family and Dimerization Analysis of HB7 and HB12 inGenes · 2022Article
- Identification and characterization of stress responsive homeodomain leucine zipper transcription factors in Medicago truncatula.Molecular biology reports · 2022Article
- Systematic analysis of HD-ZIP transcription factors in sesame genome and gene expression profiling of SiHD-ZIP class I entailing drought stress responses at early seedling stage.Molecular biology reports · 2022Article
- Plant Transcription Factors Involved in Drought and Associated Stresses.International journal of molecular sciences · 2021Review
- Overexpression of CassavaPlants (Basel, Switzerland) · 2021Article
- Genome-Wide Characterization and Expression Analysis of the HD-ZIP Gene Family in Response to Salt Stress in Pepper.International journal of genomics · 2021Article
- Cassava AGPase genes and their encoded proteins are different from those of other plants.Planta · 2019Article
- Genome-wide characterization and expression analysis of the HD-Zip gene family in response to drought and salinity stresses in sesame.BMC genomics · 2019Article
- Genome-Wide Analysis of Dynamin Gene Family in cassava (International journal of molecular sciences · 2019Article
- Genome-wide identification and expression profile of HD-ZIP genes in physic nut and functional analysis of the JcHDZ16 gene in transgenic rice.BMC plant biology · 2019Article
- Stochasticity in transcriptional expression of a negative regulator of Arabidopsis ABA network.3 Biotech · 2019Article
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Authors and funding
9 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Homeodomain-leucine zipper (HD-Zip) gene family plays important roles in various abiotic stresses and hormone signaling in plants. However, no information is currently available regarding this family in cassava (Manihot esculenta), an important drought-tolerant crop in tropical and sub-tropical areas. Here, 57 HD-Zip genes (MeHDZ01-57) were identified in the cassava genome, and they were classified into four subfamilies based on phylogenetic analysis, which was further supported by their gene structure and conserved motif characteristics. Of which five gene pairs were involved in segmental duplication but none for tandem duplication, suggesting that segmental duplication was the main cause for the expansion of MeHDZ gene family in cassava. Global expression profiles revealed that MeHDZ genes were constitutively expressed, or not expressed, or tissue-specific expressed in examined tissues in both cultivated and wild subspecies. Transcriptomic analysis of three genotypes showed that most of MeHDZ genes responded differently to drought and polyethylene glycol treatments. Subsequently, quantitative RT-PCR analysis revealed comprehensive responses of twelve selected MeHDZ genes to various stimuli including cold, salt, and ABA treatments. These findings will increase our understanding of HD-Zip gene family involved in abiotic stresses and signaling transduction, and will provide a solid base for further functional characterization of MeHDZ genes in cassava.
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