Evidence map›Paper›PMID 28247455›Full record

ArticleAddiction biology2018

On the relationships in rhesus macaques between chronic ethanol consumption and the brain transcriptome.

Ovidiu D Iancu, Alexander Colville, Nicole A R Walter, Priscila Darakjian, Denesa L Oberbeck, James B Daunais, Christina L Zheng, Robert P Searles, Shannon K McWeeney, Kathleen A Grant and 1 more

Open access · greenAbstract read
In one paragraph

Article in Addiction biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Chronic ethanol consumption alters lamina propria leukocyte response to stimulation in a region-dependent manner.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
  17. Time for a Drink? A Mathematical Model of Non-human Primate Alcohol Consumption.Frontiers in applied mathematics and statistics · 2019
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Ovidiu D IancuOregon Health and Science University, Portland, OR, USA.
Alexander ColvilleOregon Health and Science University, Portland, OR, USA.
Nicole A R WalterOregon Health and Science University, Portland, OR, USA.
Priscila DarakjianOregon Health and Science University, Portland, OR, USA.
Denesa L OberbeckOregon Health and Science University, Portland, OR, USA.ORCID 0000-0002-6406-2783
James B DaunaisWake Forest School of Medicine, Winston-Salem, NC, USA.
Christina L ZhengOregon Health and Science University, Portland, OR, USA.
Robert P SearlesOregon Health and Science University, Portland, OR, USA.
Shannon K McWeeneyOregon Health and Science University, Portland, OR, USA.
Kathleen A GrantOregon Health and Science University, Portland, OR, USA.
Robert HitzemannOregon Health and Science University, Portland, OR, USA.
Oregon Health & Science University · USWake Forest University · US

Funding

Upgrade of confocal microscopy at the Oregon National Primate Research CenterP51OD011092 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Bonnie J. Nagel · 2012 to 2026
$203.9M
Translational measures of risk for excessive alcohol consumptionP60AA010760 · NIAAA · OREGON HEALTH & SCIENCE UNIVERSITY · PI TAMARA J. PHILLIPS · 2006 to 2026
$34.5M
Stress and Ethanol Self-Administration in MonkeysU01AA013510 · NIAAA · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI KATHLEEN A GRANT · 2002 to 2026
$11.8M
Selective Breeding for Drinking in the Circadian DarkU01AA013519 · NIAAA · OREGON HEALTH & SCIENCE UNIVERSITY · PI Angela Renee Ozburn · 2001 to 2026
$10.9M
THERMAL AND METABOLIC DYSFUNCTION DURING WITHDRAWALP50AA010760 · NIAAA · OREGON HEALTH AND SCIENCE UNIVERSITY · PI CRABBE, JOHN C. · 1996 to 2005
$10.7M
Monkey Alcohol Tissue Research Resource (MATRR)R24AA019431 · NIAAA · OREGON HEALTH & SCIENCE UNIVERSITY · PI Mary Lauren Benton, Verginia Carmella Cuzon Carlson · 2010 to 2026
$10.3M
Neurocircuitry Mapping and Genotyping CoreU01AA013484 · NIAAA · OREGON HEALTH & SCIENCE UNIVERSITY · PI HITZEMANN, ROBERT J. · 2001 to 2021
$6.2M
Mapping the Genes for Ethanol-Related PhenotypesR01AA011034 · NIAAA · STATE UNIVERSITY NEW YORK STONY BROOK · PI HITZEMANN, ROBERT J. · 1996 to 2014
$5.1M
NIAAA NIH HHS P50 AA010760NIAAA NIH HHS P60 AA010760NIAAA NIH HHS R01 AA011034NIAAA NIH HHS R24 AA019431NIAAA NIH HHS U01 AA013484NIAAA NIH HHS U01 AA013510NIAAA NIH HHS U01 AA013519NIH HHS P51 OD011092
6 · The paper itself

Abstract

This is the first description of the relationship between chronic ethanol self-administration and the brain transcriptome in a non-human primate (rhesus macaque). Thirty-one male animals self-administered ethanol on a daily basis for over 12 months. Gene transcription was quantified with RNA-Seq in the central nucleus of the amygdala (CeA) and cortical Area 32. We constructed coexpression and cosplicing networks, and we identified areas of preservation and areas of differentiation between regions and network types. Correlations between intake and transcription included largely distinct gene sets and annotation categories across brain regions and between expression and splicing; positive and negative correlations were also associated with distinct annotation groups. Membrane, synaptic and splicing annotation categories were over-represented in the modules (gene clusters) enriched in positive correlations (CeA); our cosplicing analysis further identified the genes affected only at the exon inclusion level. In the CeA coexpression network, we identified Rab6b, Cdk18 and Igsf21 among the intake-correlated hubs, while in the Area 32, we identified a distinct hub set that included Ppp3r1 and Myeov2. Overall, the data illustrate that excessive ethanol self-administration is associated with broad expression and splicing mechanisms that involve membrane and synapse genes.

Indexed as

Alcohol DrinkingAnimalsBrainCalcineurinCentral Amygdaloid NucleusCentral Nervous System DepressantsCerebral CortexCyclin-Dependent KinasesEthanolGene Expression ProfilingIntracellular Signaling Peptides and ProteinsMacaca mulattaMaleNerve Tissue Proteinsrab GTP-Binding ProteinsRNA SplicingCalcineurinCentral Nervous System DepressantsCyclin-Dependent KinasesEthanolIntracellular Signaling Peptides and ProteinsNerve Tissue ProteinsPCTAIRE-3 protein kinaserab GTP-Binding Proteinsaddictioncosplicingethanolnetwork analysisnon-human primateRNA-Seq

Identifiers

PMID28247455
PMCPMC5671907
OpenAlexW2592288917

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.