Evidence map›Paper›PMID 28247269›Full record

ArticleJournal of neurovirology2017

Dynamic of CSF and serum biomarkers in HIV-1 subtype C encephalitis with CNS genetic compartmentalization-case study.

Sergio M de Almeida, Indianara Rotta, Clea E Ribeiro, Michelli F Oliveira, Antoine Chaillon, Ana Paula de Pereira, Ana Paula Cunha, Marise Zonta, Joao França Bents, Sonia M Raboni and 3 more

Abstract readCase Reports
In one paragraph

Article in Journal of neurovirology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. CD3Journal of neuroimmunology · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Observational
  9. Article
  10. Review
  11. Article
  12. Review
  13. Quasispecies and virus.European biophysics journal : EBJ · 2018
    Review
  14. Article
  15. Review
  16. CSF in acute and chronic infectious diseases.Handbook of clinical neurology · 2017
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Sergio M de AlmeidaUniversidade Federal do Paraná, Curitiba, Paraná, Brazil. sergio.ma@ufpr.br.
Indianara RottaUniversidade Federal do Paraná, Curitiba, Paraná, Brazil.
Clea E RibeiroUniversidade Federal do Paraná, Curitiba, Paraná, Brazil.
Michelli F OliveiraUniversity of California, San Diego, San Diego, CA, USA.
Antoine ChaillonUniversity of California, San Diego, San Diego, CA, USA.
Ana Paula de PereiraUniversidade Federal do Paraná, Curitiba, Paraná, Brazil.
Ana Paula CunhaUniversidade Federal do Paraná, Curitiba, Paraná, Brazil.
Marise ZontaUniversidade Federal do Paraná, Curitiba, Paraná, Brazil.
Joao França BentsUniversidade Federal do Paraná, Curitiba, Paraná, Brazil.
Sonia M RaboniUniversidade Federal do Paraná, Curitiba, Paraná, Brazil.
Davey SmithUniversity of California, San Diego, San Diego, CA, USA.
Scott LetendreUniversity of California, San Diego, San Diego, CA, USA.
Ronald J EllisUniversity of California, San Diego, San Diego, CA, USA.

Funding

VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUSAN JANET LITTLE · 1994 to 2026
$78.4M
STRUCTURAL NEUROIMAGING COREP30MH062512 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DAVID J MOORE · 2001 to 2026
$50.4M
A Multi-Site Investigation into the Effect of HIV Clade on Neurocognitive ImpairmR01MH083552 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SMITH, DAVID MITCHELL · 2008 to 2012
$3.3M
Intrahost HIV population dynamics in CNS and other tissuesR01MH101012 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ELLIS, RONALD J. · 2013 to 2015
$1.2M
Midcareer Investigator Award in Patient-Oriented NeuroAIDS ResearchK24MH097673 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LETENDRE, SCOTT L · 2013 to 2017
$917k
HIV Clade on Cognitive and Neurological Disorders BrazilR21MH076651 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ELLIS, RONALD J. · 2006 to 2007
$317k
Milliplex FlexMAP 3DS10RR031646 · NCRR · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LETENDRE, SCOTT L · 2011 to 2011
$153k
NCRR NIH HHS S10 RR031646NIAID NIH HHS P30 AI036214NIMH NIH HHS K24 MH097673NIMH NIH HHS P30 MH062512NIMH NIH HHS R01 MH083552NIMH NIH HHS R01 MH101012NIMH NIH HHS R21 MH076651
6 · The paper itself

Abstract

Despite the effective suppression of viremia with antiretroviral therapy, HIV can still replicate in the central nervous system (CNS). This was a longitudinal study of the cerebrospinal fluid (CSF) and serum dynamics of several biomarkers related to inflammation, the blood-brain barrier, neuronal injury, and IgG intrathecal synthesis in serial samples of CSF and serum from a patient infected with HIV-1 subtype C with CNS compartmentalization.The phylogenetic analyses of plasma and CSF samples in an acute phase using next-generation sequencing and F-statistics analysis of C2-V3 haplotypes revealed distinct compartmentalized CSF viruses in paired CSF and peripheral blood mononuclear cell samples. The CSF biomarker analysis in this patient showed that symptomatic CSF escape is accompanied by CNS inflammation, high levels of cell and humoral immune biomarkers, CNS barrier dysfunction, and an increase in neuronal injury biomarkers with demyelization. Independent and isolated HIV replication can occur in the CNS, even in HIV-1 subtype C, leading to compartmentalization and development of quasispecies distinct from the peripheral plasma. These immunological aspects of the HIV CNS escape have not been described previously. To our knowledge, this is the first report of CNS HIV escape and compartmentalization in HIV-1 subtype C.

Indexed as

Immune EvasionAdultAnti-HIV AgentsBiomarkersBlood-Brain BarrierCentral Nervous SystemChemokine CCL5Encephalitis, ViralHIV-1HIV AntibodiesHIV InfectionsHumansImmunoglobulin GLeukocytes, MononuclearLipopolysaccharide ReceptorsLongitudinal StudiesAnti-HIV AgentsBiomarkersCCL5 protein, humanChemokine CCL5HIV AntibodiesImmunoglobulin GLipopolysaccharide ReceptorsMyelin Basic Proteinneurofilament protein LNeurofilament ProteinsRNA, ViralBiomarkersCentral nervous systemCompartmentalizationCSFHIVNeurologic manifestationsNew generation sequenceSubtypeSubtype C

Identifiers

PMID28247269
PMCPMC5441962

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.