Evidence map›Paper›PMID 28246399›Full record

ArticleScientific reports2017

Usp7-dependent histone H3 deubiquitylation regulates maintenance of DNA methylation.

Luna Yamaguchi, Atsuya Nishiyama, Toshinori Misaki, Yoshikazu Johmura, Jun Ueda, Kyohei Arita, Koji Nagao, Chikashi Obuse, Makoto Nakanishi

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
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  8. Article
  9. USP7 accelerates FMR1-mediated ferroptosis by facilitating TBK1 ubiquitination and DNMT1 deubiquitination after renal ischemia-reperfusion injury.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2022
    Article
  10. Review
  11. Probing protein ubiquitination in live cells.Nucleic acids research · 2022
    Article
  12. Mechanisms of chromatin-based epigenetic inheritance.Science China. Life sciences · 2022
    Review
  13. Article
  14. Article
  15. Article
  16. The UHRF protein family in epigenetics, development, and carcinogenesis.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2022
    Review
  17. Article
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Luna YamaguchiDepartment of Cell Biology, Graduate School of Medical Sciences, Nagoya City University, 1, Kawasumi, Mizuho-cho, Mizuho-ku, Nagoya, 467-8601, Japan.
Atsuya NishiyamaDivision of Cancer Cell biology, Department of Cancer Biology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan. anishiya@ims.u-tokyo.ac.jp.
Toshinori MisakiDepartment of Cell Biology, Graduate School of Medical Sciences, Nagoya City University, 1, Kawasumi, Mizuho-cho, Mizuho-ku, Nagoya, 467-8601, Japan.
Yoshikazu JohmuraDivision of Cancer Cell biology, Department of Cancer Biology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.
Jun UedaCenter for Education in Laboratory Animal Research, Chubu University, Kasugai, Aichi, 487-8501, Japan.
Kyohei AritaGraduate School of Medical Life Sciences, Yokohama City University, 1-7-29, Suehiro-cho, Tsurumi-ku, Yokohama, 230-0045, Japan.
Koji NagaoDivision of Molecular Life Science, Graduate School of Life Science, Hokkaido University, Sapporo, 001-0020, Japan.
Chikashi ObuseDivision of Molecular Life Science, Graduate School of Life Science, Hokkaido University, Sapporo, 001-0020, Japan.
Makoto NakanishiDepartment of Cell Biology, Graduate School of Medical Sciences, Nagoya City University, 1, Kawasumi, Mizuho-cho, Mizuho-ku, Nagoya, 467-8601, Japan. mkt-naka@ims.u-tokyo.ac.jp.ORCID 0000-0002-6707-3584
Tokyo University of Science · JPHokkaido University · JPNagoya City University · JPChubu University · JPYokohama City University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Uhrf1-dependent histone H3 ubiquitylation plays a crucial role in the maintenance of DNA methylation via the recruitment of the DNA methyltransferase Dnmt1 to DNA methylation sites. However, the involvement of deubiquitylating enzymes (DUBs) targeting ubiquitylated histone H3 in the maintenance of DNA methylation is largely unknown. With the use of Xenopus egg extracts, we demonstrate here that Usp7, a ubiquitin carboxyl-terminal hydrolase, forms a stable complex with Dnmt1 and is recruited to DNA methylation sites during DNA replication. Usp7 deubiquitylates ubiquitylated histone H3 in vitro. Inhibition of Usp7 activity or its depletion in egg extracts results in enhanced and extended binding of Dnmt1 to chromatin, suppressing DNA methylation. Depletion of Usp7 in HeLa cells causes enhanced histone H3 ubiquitylation and enlargement of Dnmt1 nuclear foci during DNA replication. Our results thus suggest that Usp7 is a key factor that regulates maintenance of DNA methylation.

Indexed as

DNA MethylationUbiquitinationAnimalsChromatinDNA (Cytosine-5-)-Methyltransferase 1DNA ReplicationHeLa CellsHistonesHumansOvumUbiquitin-Specific Peptidase 7XenopusChromatinDNA (Cytosine-5-)-Methyltransferase 1HistonesUbiquitin-Specific Peptidase 7

Identifiers

PMID28246399
PMCPMC5427934
OpenAlexW2591941792

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.