Evidence map›Paper›PMID 28245845›Full record

ArticleBiology direct2017

Adaptive multiscapes: an up-to-date metaphor to visualize molecular adaptation.

Pablo Catalán, Clemente F Arias, Jose A Cuesta, Susanna Manrubia

Abstract read
In one paragraph

Article in Biology direct, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Hierarchical genotype networks and incipient ecological speciation in Q[Formula: see text] phage quasispecies.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  3. Review
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  7. The two languages of science.Genome biology · 2020
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  10. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Pablo CatalánGrupo Interdisciplinar de Sistemas Complejos (GISC), Madrid, Spain.
Clemente F AriasGrupo Interdisciplinar de Sistemas Complejos (GISC), Madrid, Spain.
Jose A CuestaGrupo Interdisciplinar de Sistemas Complejos (GISC), Madrid, Spain.
Susanna ManrubiaGrupo Interdisciplinar de Sistemas Complejos (GISC), Madrid, Spain. smanrubia@cnb.csic.es.ORCID 0000-0003-0134-2785

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWright's metaphor of the fitness landscape has shaped and conditioned our view of the adaptation of populations for almost a century. Since its inception, and including criticism raised by Wright himself, the concept has been surrounded by controversy. Among others, the debate stems from the intrinsic difficulty to capture important features of the space of genotypes, such as its high dimensionality or the existence of abundant ridges, in a visually appealing two-dimensional picture. Two additional currently widespread observations come to further constrain the applicability of the original metaphor: the very skewed distribution of phenotype sizes (which may actively prevent, due to entropic effects, the achievement of fitness maxima), and functional promiscuity (i.e. the existence of secondary functions which entail partial adaptation to environments never encountered before by the population).

resultsHere we revise some of the shortcomings of the fitness landscape metaphor and propose a new "scape" formed by interconnected layers, each layer containing the phenotypes viable in a given environment. Different phenotypes within a layer are accessible through mutations with selective value, while neutral mutations cause displacements of populations within a phenotype. A different environment is represented as a separated layer, where phenotypes may have new fitness values, other phenotypes may be viable, and the same genotype may yield a different phenotype, representing genotypic promiscuity. This scenario explicitly includes the many-to-many structure of the genotype-to-phenotype map. A number of empirical observations regarding the adaptation of populations in the light of adaptive multiscapes are reviewed.

conclusionsSeveral shortcomings of Wright's visualization of fitness landscapes can be overcome through adaptive multiscapes. Relevant aspects of population adaptation, such as neutral drift, functional promiscuity or environment-dependent fitness, as well as entropic trapping and the concomitant impossibility to reach fitness peaks are visualized at once. Adaptive multiscapes should aid in the qualitative understanding of the multiple pathways involved in evolutionary dynamics. REVIEWERS: This article was reviewed by Eugene Koonin and Ricard Solé.

Indexed as

Adaptation, BiologicalEvolution, MolecularModels, GeneticGenotypeMutationPhenotypePopulation DynamicsSelection, GeneticAdaptive landscapeEnvironmentFunctional promiscuityGenotype-phenotype mapNeutral networksPhenotype size

Identifiers

PMID28245845
PMCPMC5331743

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.