Evidence map›Paper›PMID 28245277›Full record

ArticlePloS one2017

Environmental DNA reflects spatial and temporal jellyfish distribution.

Toshifumi Minamoto, Miho Fukuda, Koki R Katsuhara, Ayaka Fujiwara, Shunsuke Hidaka, Satoshi Yamamoto, Kohji Takahashi, Reiji Masuda

Abstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Improvement of recovery yield of macro-organismal environmental DNA from seawater samples.Analytical sciences : the international journal of the Japan Society for Analytical Chemistry · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Toshifumi MinamotoGraduate School of Human Development and Environment/Faculty of Human Development, Kobe University, Kobe City, Hyogo, Japan.ORCID http://orcid.org/0000-0002-5379-1622
Miho FukudaGraduate School of Human Development and Environment/Faculty of Human Development, Kobe University, Kobe City, Hyogo, Japan.
Koki R KatsuharaGraduate School of Human Development and Environment/Faculty of Human Development, Kobe University, Kobe City, Hyogo, Japan.
Ayaka FujiwaraGraduate School of Human Development and Environment/Faculty of Human Development, Kobe University, Kobe City, Hyogo, Japan.
Shunsuke HidakaGraduate School of Human Development and Environment/Faculty of Human Development, Kobe University, Kobe City, Hyogo, Japan.
Satoshi YamamotoGraduate School of Human Development and Environment/Faculty of Human Development, Kobe University, Kobe City, Hyogo, Japan.
Kohji TakahashiMaizuru Fisheries Research Station, Kyoto University, Maizuru City, Kyoto, Japan.
Reiji MasudaMaizuru Fisheries Research Station, Kyoto University, Maizuru City, Kyoto, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent development of environmental DNA (eDNA) analysis allows us to survey underwater macro-organisms easily and cost effectively; however, there have been no reports on eDNA detection or quantification for jellyfish. Here we present the first report on an eDNA analysis of marine jellyfish using Japanese sea nettle (Chrysaora pacifica) as a model species by combining a tank experiment with spatial and temporal distribution surveys. We performed a tank experiment monitoring eDNA concentrations over a range of time intervals after the introduction of jellyfish, and quantified the eDNA concentrations by quantitative real-time PCR. The eDNA concentrations peaked twice, at 1 and 8 h after the beginning of the experiment, and became stable within 48 h. The estimated release rates of the eDNA in jellyfish were higher than the rates previously reported in fishes. A spatial survey was conducted in June 2014 in Maizuru Bay, Kyoto, in which eDNA was collected from surface water and sea floor water samples at 47 sites while jellyfish near surface water were counted on board by eye. The distribution of eDNA in the bay corresponded with the distribution of jellyfish inferred by visual observation, and the eDNA concentration in the bay was ~13 times higher on the sea floor than on the surface. The temporal survey was conducted from March to November 2014, in which jellyfish were counted by eye every morning while eDNA was collected from surface and sea floor water at three sampling points along a pier once a month. The temporal fluctuation pattern of the eDNA concentrations and the numbers of observed individuals were well correlated. We conclude that an eDNA approach is applicable for jellyfish species in the ocean.

Indexed as

AnimalsDNAEcosystemEnvironmental MonitoringFishesModels, TheoreticalReal-Time Polymerase Chain ReactionDNA

Identifiers

PMID28245277
PMCPMC5330514

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.