Evidence map›Paper›PMID 28244872›Full record

ArticleeLife2017

Kinetics of the LOV domain of ZEITLUPE determine its circadian function in

Ashutosh Pudasaini, Jae Sung Shim, Young Hun Song, Hua Shi, Takatoshi Kiba, David E Somers, Takato Imaizumi, Brian D Zoltowski

Open access · goldAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
20.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it, 75 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Review
  5. Steady-stateFrontiers in plant science · 2026
    Article
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  7. Article
  8. Article
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  10. Article
  11. Residue alterations within a conserved hydrophobic pocket influence light, oxygen, voltage photoreceptor dark recovery.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2023
    Article
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  17. Article
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  19. Article
  20. Hot topic: Thermosensing in plants.Plant, cell & environment · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Ashutosh PudasainiDepartment of Chemistry, Southern Methodist University, Dallas, United States.
Jae Sung ShimDepartment of Biology, University of Washington, Seattle, United States.
Young Hun SongDepartment of Biology, University of Washington, Seattle, United States.
Hua ShiDepartment of Molecular Genetics, Ohio State University, Columbus, United States.
Takatoshi KibaRIKEN Center for Sustainable Resource Science, Yokohama, Japan.
David E SomersDepartment of Molecular Genetics, Ohio State University, Columbus, United States.
Takato ImaizumiDepartment of Biology, University of Washington, Seattle, United States.
Brian D ZoltowskiDepartment of Chemistry, Southern Methodist University, Dallas, United States.ORCID 0000-0001-6749-0743
University of Washington · USSouthern Methodist University · USThe Ohio State University · USRIKEN Center for Sustainable Resource Science · JP

Funding

Overall (pp. 40-62)P41GM103485 · NIGMS · CORNELL UNIVERSITY · PI CERIONE, RICHARD A. · 2012 to 2018
$15.5M
Molecular Mechanisms of Seasonal Time MeasurementR01GM079712 · NIGMS · UNIVERSITY OF WASHINGTON · PI IMAIZUMI, TAKATO · 2007 to 2022
$3.5M
Post-translational control mechanisms of the circadian clockR01GM093285 · NIGMS · OHIO STATE UNIVERSITY · PI SOMERS, DAVID E · 2010 to 2018
$2.7M
Structural Flexibility Mediates Circadian Adaptation in Diverse OrganismsR15GM109282 · NIGMS · SOUTHERN METHODIST UNIVERSITY · PI ZOLTOWSKI, BRIAN DAVID · 2014 to 2021
$1.2M
NIGMS NIH HHS P41 GM103485NIGMS NIH HHS R01 GM079712NIGMS NIH HHS R01 GM093285NIGMS NIH HHS R15 GM109282
6 · The paper itself

Abstract

A LOV (Light, Oxygen, or Voltage) domain containing blue-light photoreceptor ZEITLUPE (ZTL) directs circadian timing by degrading clock proteins in plants. Functions hinge upon allosteric differences coupled to the ZTL photocycle; however, structural and kinetic information was unavailable. Herein, we tune the ZTL photocycle over two orders of magnitude. These variants reveal that ZTL complexes with targets independent of light, but dictates enhanced protein degradation in the dark. In vivo experiments definitively show photocycle kinetics dictate the rate of clock component degradation, thereby impacting circadian period. Structural studies demonstrate that photocycle dependent activation of ZTL depends on an unusual dark-state conformation of ZTL. Crystal structures of ZTL LOV domain confirm delineation of structural and kinetic mechanisms and identify an evolutionarily selected allosteric hinge differentiating modes of PAS/LOV signal transduction. The combined biochemical, genetic and structural studies provide new mechanisms indicating how PAS/LOV proteins integrate environmental variables in complex networks.

Indexed as

Circadian ClocksArabidopsisArabidopsis ProteinsCrystallography, X-RayDarknessKineticsLightModels, MolecularProtein ConformationProteolysisArabidopsis ProteinsZTL protein, ArabidopsisallosteryA. thalianabiophysicscircadian clockLOV domainplant biologystructural biology

Identifiers

PMID28244872
PMCPMC5370183
OpenAlexW2593067963

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.