Evidence map›Paper›PMID 28242473›Full record

ArticleMedical image analysis2017

Task fMRI data analysis based on supervised stochastic coordinate coding.

Jinglei Lv, Binbin Lin, Qingyang Li, Wei Zhang, Yu Zhao, Xi Jiang, Lei Guo, Junwei Han, Xintao Hu, Christine Guo and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Medical image analysis, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 50 citations in OpenAlex.

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  11. Modeling task-based fMRI data via deep belief network with neural architecture search.Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Jinglei LvCortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Athens, GA, USA; Translational Neuroscience, QIMR Berghofer Medical Research Institute, Herston, Queensland, Australia.
Binbin LinDepartment of Computational Medicine and Bioinformatics & Department of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, MI, USA.
Qingyang LiDepartment of Computer Science and Engineering, Arizona State University, Tempe, AZ, USA.
Wei ZhangCortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Athens, GA, USA.
Yu ZhaoCortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Athens, GA, USA.
Xi JiangCortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Athens, GA, USA.
Lei GuoSchool of Automation, Northwestern Polytechnical University, Xi'an, PR China.
Junwei HanSchool of Automation, Northwestern Polytechnical University, Xi'an, PR China.
Xintao HuSchool of Automation, Northwestern Polytechnical University, Xi'an, PR China.
Christine GuoTranslational Neuroscience, QIMR Berghofer Medical Research Institute, Herston, Queensland, Australia.
Jieping YeDepartment of Computational Medicine and Bioinformatics & Department of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, MI, USA.
Tianming LiuCortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Athens, GA, USA. Electronic address: tliu@uga.edu.
University of Georgia · USNorthwestern Polytechnical University · CNQIMR Berghofer Medical Research Institute · AUUniversity of Michigan–Ann Arbor · USArizona State University · US

Funding

Assessing Large-scale Connectivities in Prenatal Cocaine Exposure Affected BrainsR01DA033393 · NIDA · UNIVERSITY OF GEORGIA · PI HU, XIAOPING P, LIU, TIANMING · 2012 to 2016
$1.6M
Assessing Large-scale Brain Connectivities in Mild Cognitive ImpairmentR01AG042599 · NIA · UNIVERSITY OF GEORGIA · PI LIU, TIANMING · 2013 to 2017
$1.4M
NIA NIH HHS R01 AG042599NIDA NIH HHS R01 DA033393
6 · The paper itself

Abstract

Task functional magnetic resonance imaging (fMRI) has been widely employed for brain activation detection and brain network analysis. Modeling rich information from spatially-organized collection of fMRI time series is challenging because of the intrinsic complexity. Hypothesis-driven methods, such as the general linear model (GLM), which regress exterior stimulus from voxel-wise functional brain activity, are limited due to overlooking the complexity of brain activities and the diversity of concurrent brain networks. Recently, sparse representation and dictionary learning methods have attracted increasing interests in task fMRI data analysis. The major advantage of this methodology is its promise in reconstructing concurrent brain networks systematically. However, this data-driven strategy is, to some extent, arbitrary and does not sufficiently utilize the prior information of task design and neuroscience knowledge. To bridge this gap, we here propose a novel supervised sparse representation and dictionary learning framework based on stochastic coordinate coding (SCC) algorithm for task fMRI data analysis, in which certain brain networks are learned with known information such as pre-defined temporal patterns and spatial network patterns, and at the same time other networks are learned automatically from data. Our proposed method has been applied to two independent task fMRI datasets, and qualitative and quantitative evaluations have shown that our method provides a new and effective framework for task fMRI data analysis.

Indexed as

AlgorithmsBrainBrain MappingConnectomeHumansLinear ModelsMagnetic Resonance ImagingMotor SkillsPattern Recognition, AutomatedStochastic ProcessesBrain networksSupervised sparse codingTask fMRI

Identifiers

PMID28242473
PMCPMC5401655
OpenAlexW2591226121

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.