Evidence map›Paper›PMID 28241004›Full record

ArticlePLoS genetics2017

Differential Sensitivity of Target Genes to Translational Repression by miR-17~92.

Hyun Yong Jin, Hiroyo Oda, Pengda Chen, Chao Yang, Xiaojuan Zhou, Seung Goo Kang, Elizabeth Valentine, Jennifer M Kefauver, Lujian Liao, Yaoyang Zhang and 12 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 35 citations in OpenAlex.

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  16. MicroRNA says no to mass production.Nature immunology · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 5 institutions in 3 countries.

Hyun Yong JinDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.
Hiroyo OdaDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.
Pengda ChenState Key Laboratory of Cellular Stress Biology, Innovation Center for Cell Signaling Network, School of Life Sciences, Xiamen University, Xiamen, Fujian, China.
Chao YangState Key Laboratory of Cellular Stress Biology, Innovation Center for Cell Signaling Network, School of Life Sciences, Xiamen University, Xiamen, Fujian, China.ORCID 0000-0002-2384-2900
Xiaojuan ZhouState Key Laboratory of Cellular Stress Biology, Innovation Center for Cell Signaling Network, School of Life Sciences, Xiamen University, Xiamen, Fujian, China.ORCID 0000-0002-6632-3297
Seung Goo KangDivision of Biomedical Convergence/Institute of Bioscience & Biotechnology, College of Biomedical Science, Kangwon National University, Chuncheon, Republic of Korea.
Elizabeth ValentineDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, United States of America.
Jennifer M KefauverDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.ORCID 0000-0002-6818-4673
Lujian LiaoShanghai Key Laboratory of Regulatory Biology, Shanghai Key Laboratory of Brain Functional Genomics (Ministry of Education), School of Life Sciences, East China Normal University, Shanghai, China.
Yaoyang ZhangInterdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, China.
Alicia Gonzalez-MartinDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.
Jovan ShepherdDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.
Gareth J MorganDepartment of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California, United States of America.ORCID 0000-0002-1275-2010
Tony S MondalaNext Generation Sequencing Core, The Scripps Research Institute, La Jolla, California, United States of America.ORCID 0000-0002-2809-3187
Steven R HeadNext Generation Sequencing Core, The Scripps Research Institute, La Jolla, California, United States of America.
Pyeung-Hyeun KimDepartment of Molecular Bioscience/Institute of Bioscience & Biotechnology, College of Biomedical Science, Kangwon National University, Chuncheon, Republic of Korea.
Nengming XiaoState Key Laboratory of Cellular Stress Biology, Innovation Center for Cell Signaling Network, School of Life Sciences, Xiamen University, Xiamen, Fujian, China.ORCID 0000-0001-5417-707X
Guo FuState Key Laboratory of Cellular Stress Biology, Innovation Center for Cell Signaling Network, School of Life Sciences, Xiamen University, Xiamen, Fujian, China.
Wen-Hsien LiuState Key Laboratory of Cellular Stress Biology, Innovation Center for Cell Signaling Network, School of Life Sciences, Xiamen University, Xiamen, Fujian, China.
Jiahuai HanState Key Laboratory of Cellular Stress Biology, Innovation Center for Cell Signaling Network, School of Life Sciences, Xiamen University, Xiamen, Fujian, China.
James R WilliamsonDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, United States of America.ORCID 0000-0002-8772-468X
Changchun XiaoDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.ORCID 0000-0001-8754-3208
Scripps Research Institute · USXiamen University · CNKangwon National University · KRChinese Academy of Sciences · CNEast China Normal University · CN

Funding

STRUCTURE AND ASSEMBLY OF 30 S CENTRAL DOMAIN RNPSR01GM053757 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI WILLIAMSON, JAMES R · 1996 to 2020
$5.0M
Regulation of T Follicular Helper Cell Differentiation by MicroRNAsR01AI121155 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI NEMAZEE, DAVID · 2016 to 2020
$2.8M
The Role of miR-17~92 in Autoimmune DiseasesR01AI087634 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI XIAO, CHANGCHUN · 2010 to 2014
$2.2M
Functional Analysis of MicroRNAs in Lymphocyte Development and Immune ToleranceR01AI089854 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI XIAO, CHANGCHUN · 2011 to 2014
$1.2M
Deep Sequencing of Small Regulatory RNAs in Diffuse Large B cell LymphomaRC1CA146299 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI XIAO, CHANGCHUN · 2009 to 2010
$1000k
Regulation of T Follicular Helper Cell Differentiation by MicroRNAsR56AI110403 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI XIAO, CHANGCHUN · 2015 to 2015
$474k
Regulation of T Follicular Helper Cell Differentiation by MicroRNAsR56AI121155 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI XIAO, CHANGCHUN · 2016 to 2016
$131k
NCI NIH HHS RC1 CA146299NIAID NIH HHS R01 AI087634NIAID NIH HHS R01 AI089854NIAID NIH HHS R01 AI121155NIAID NIH HHS R56 AI110403NIAID NIH HHS R56 AI121155NIGMS NIH HHS R01 GM053757
6 · The paper itself

Abstract

MicroRNAs (miRNAs) are thought to exert their functions by modulating the expression of hundreds of target genes and each to a small degree, but it remains unclear how small changes in hundreds of target genes are translated into the specific function of a miRNA. Here, we conducted an integrated analysis of transcriptome and translatome of primary B cells from mutant mice expressing miR-17~92 at three different levels to address this issue. We found that target genes exhibit differential sensitivity to miRNA suppression and that only a small fraction of target genes are actually suppressed by a given concentration of miRNA under physiological conditions. Transgenic expression and deletion of the same miRNA gene regulate largely distinct sets of target genes. miR-17~92 controls target gene expression mainly through translational repression and 5'UTR plays an important role in regulating target gene sensitivity to miRNA suppression. These findings provide molecular insights into a model in which miRNAs exert their specific functions through a small number of key target genes.

Indexed as

Gene Expression Regulation5' Untranslated RegionsAnimalsBase SequenceBcl-2-Like Protein 11B-LymphocytesCells, CulturedFlow CytometryGene Expression ProfilingImmunoblottingMice, KnockoutMice, TransgenicMicroRNAsProtein BiosynthesisProtein Serine-Threonine KinasesReceptors, Transforming Growth Factor beta5' Untranslated RegionsBcl2l11 protein, mouseBcl-2-Like Protein 11MicroRNAsMIRN17-92 microRNA, mouseProtein Serine-Threonine KinasesReceptors, Transforming Growth Factor betaReceptor, Transforming Growth Factor-beta Type II

Identifiers

PMID28241004
PMCPMC5348049
OpenAlexW2592485210

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.