Evidence map›Paper›PMID 28240777›Full record

ArticlePlant, cell & environment2017

A laboratory simulation of Arabidopsis seed dormancy cycling provides new insight into its regulation by clock genes and the dormancy-related genes DOG1, MFT, CIPK23 and PHYA.

Steven Footitt, Hülya Ölçer-Footitt, Angela J Hambidge, William E Finch-Savage

Open access · hybridAbstract read
In one paragraph

Article in Plant, cell & environment, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
13.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 94 citations in OpenAlex.

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  7. Genome-wide identification of PEBP gene family inFrontiers in plant science · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Steven FootittSchool of Life Sciences, Wellesbourne Campus, University of Warwick, Warwick, Warwickshire, CV35 9EF, UK.ORCID http://orcid.org/0000-0003-2056-3858
Hülya Ölçer-FootittDepartment of Biology, Faculty of Arts and Sciences, Evliya Celebi Campus, Dumlupınar University, TR-43100, Kütahya, Turkey.
Angela J HambidgeSchool of Life Sciences, Wellesbourne Campus, University of Warwick, Warwick, Warwickshire, CV35 9EF, UK.
William E Finch-SavageSchool of Life Sciences, Wellesbourne Campus, University of Warwick, Warwick, Warwickshire, CV35 9EF, UK.
Warwickshire College · GBDumlupinar University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Environmental signals drive seed dormancy cycling in the soil to synchronize germination with the optimal time of year, a process essential for species' fitness and survival. Previous correlation of transcription profiles in exhumed seeds with annual environmental signals revealed the coordination of dormancy-regulating mechanisms with the soil environment. Here, we developed a rapid and robust laboratory dormancy cycling simulation. The utility of this simulation was tested in two ways: firstly, using mutants in known dormancy-related genes [DELAY OF GERMINATION 1 (DOG1), MOTHER OF FLOWERING TIME (MFT), CBL-INTERACTING PROTEIN KINASE 23 (CIPK23) and PHYTOCHROME A (PHYA)] and secondly, using further mutants, we test the hypothesis that components of the circadian clock are involved in coordination of the annual seed dormancy cycle. The rate of dormancy induction and relief differed in all lines tested. In the mutants, dog1-2 and mft2, dormancy induction was reduced but not absent. DOG1 is not absolutely required for dormancy. In cipk23 and phyA dormancy, induction was accelerated. Involvement of the clock in dormancy cycling was clear when mutants in the morning and evening loops of the clock were compared. Dormancy induction was faster when the morning loop was compromised and delayed when the evening loop was compromised.

Indexed as

Gene Expression Regulation, PlantAbscisic AcidArabidopsisArabidopsis ProteinsBiological ClocksComputer SimulationDarknessEcotypeGenes, PlantGerminationIslandsMutationPlant DormancySeasonsTemperatureTime FactorsAbscisic AcidArabidopsis Proteinscircadian clockcircannual rhythmgerminationthermal time

Identifiers

PMID28240777
PMCPMC5518234
OpenAlexW2594677397

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.