Evidence map›Paper›PMID 28238627›Full record

SynthesisThe Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases

A systematic review of East African-Indian family of Mycobacterium tuberculosis in Brazil.

Tonya Azevedo Duarte, Joilda Silva Nery, Neio Boechat, Susan Martins Pereira, Vera Simonsen, Martha Oliveira, Maria Gabriela Miranda Gomes, Carlos Penha-Gonçalves, Mauricio Lima Barreto, Theolis Barbosa

Abstract readSystematic Review
In one paragraph

Synthesis in The Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Genetic Diversity ofPathogens (Basel, Switzerland) · 2024
    Article
  3. Heliyon · 2023
    Article
  4. Review
  5. Review
  6. Article
  7. Genetic diversity ofHeliyon · 2019
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Tonya Azevedo DuarteUniversidade Federal da Bahia, Instituto de Ciências da Saúde, Salvador, BA, Brazil. Electronic address: tonya.duarte@gmail.com.
Joilda Silva NeryUniversidade Federal da Bahia, Instituto de Saúde Coletiva, Salvador, BA, Brazil.
Neio BoechatUniversidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil.
Susan Martins PereiraUniversidade Federal da Bahia, Instituto de Saúde Coletiva, Salvador, BA, Brazil.
Vera SimonsenInstituto Adolfo Lutz, São Paulo, SP, Brazil.
Martha OliveiraUniversidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil; Brazilian Network for Research in Tuberculosis - REDE TB, Rio de Janeiro, RJ, Brazil; Fundação Oswaldo Cruz, Centro de Desenvolvimento de Tecnologia em Saúde, Rio de Janeiro, RJ, Brazil.
Maria Gabriela Miranda GomesLiverpool School of Tropical Medicine, Liverpool, United Kingdom; Universidade do Porto,Centro de Investigação em Biodiversidade e Recursos Genéticos (CIBIO-InBIO), Porto, Portugal; Universidade de São Paulo, Instituto de Matemática e Estatística, São Paulo, SP, Brazil.
Carlos Penha-GonçalvesInstituto Gulbenkian de Ciências, Oeiras, Portugal.
Mauricio Lima BarretoUniversidade Federal da Bahia, Instituto de Saúde Coletiva, Salvador, BA, Brazil; Fundação Oswaldo Cruz, Instituto Gonçalo Moniz, Salvador, BA, Brazil.
Theolis BarbosaBrazilian Network for Research in Tuberculosis - REDE TB, Rio de Janeiro, RJ, Brazil; Fundação Oswaldo Cruz, Instituto Gonçalo Moniz, Salvador, BA, Brazil; Universidade Federal da Bahia, Programa de Pós-graduação Strictu Sensu em Patologia, Salvador, BA, Brazil. Electronic address: theolis@bahia.fiocruz.br.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionThe Mycobacterium tuberculosis East African-Indian (EAI) spoligotyping family (belonging to lineage 1, Indo-Oceanic, defined by the region of deletion RD239) is distributed worldwide, but is more prevalent in Southeast Asia, India, and East Africa. Studies in Latin America have rarely identified EAI. In this study, we describe the occurrence of the EAI family in Brazil.

methodsEAI was identified in a systematic literature review of genetic diversity studies pertaining to M. tuberculosis in Brazil, as well as in a survey conducted in Salvador, Bahia, located in the northeastern region of this country.

resultsThe EAI6-BGD1 spoligotyping family and the EAI5 Spoligotype International Type (SIT) 1983 clade were the most frequently reported, with wide distribution of this particular clade described in Brazil. The distribution of other EAI spoligotyping patterns with broader worldwide distribution was restricted to the southeastern region of the country.

conclusionsEAI may be endemic at a low frequency in Brazil, with some clades indicating increased fitness with respect to this population.

Indexed as

Bacterial Typing TechniquesBrazilDNA, BacterialGenotypeMycobacterium tuberculosisPhylogeographyDNA, BacterialEpidemiologyGenotypingMycobacterium tuberculosisPhylogeography

Identifiers

PMID28238627
PMCPMC9427636

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.