Evidence map›Paper›PMID 28236344›Full record

ArticleHead & neck2017

Integration of high-risk human papillomavirus into cellular cancer-related genes in head and neck cancer cell lines.

Heather M Walline, Christine M Goudsmit, Jonathan B McHugh, Alice L Tang, John H Owen, Bin T Teh, Erin McKean, Thomas W Glover, Martin P Graham, Mark E Prince and 10 more

Open access · greenAbstract read
In one paragraph

Article in Head & neck, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 46 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Function of TRPC1 in modulating hepatocellular carcinoma progression.Medical oncology (Northwood, London, England) · 2023
    Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 4 countries.

Heather M WallineCancer Biology Program, Program in the Biomedical Sciences, Rackham Graduate School, University of Michigan, Ann Arbor, Michigan.
Christine M GoudsmitDepartment of Otolaryngology/Head and Neck Surgery, University of Michigan, Ann Arbor, Michigan.
Jonathan B McHughDepartment of Pathology, University of Michigan, Ann Arbor, Michigan.
Alice L TangDepartment of Otolaryngology/Head and Neck Surgery, University of Michigan, Ann Arbor, Michigan.
John H OwenDepartment of Otolaryngology/Head and Neck Surgery, University of Michigan, Ann Arbor, Michigan.
Bin T TehNational Cancer Centre - Cancer Science Institute of Singapore, Duke-NUS Graduate Medical School, Singapore.
Erin McKeanDepartment of Otolaryngology/Head and Neck Surgery, University of Michigan, Ann Arbor, Michigan.
Thomas W GloverDepartment of Human Genetics, University of Michigan, Ann Arbor, Michigan.
Martin P GrahamDepartment of Otolaryngology/Head and Neck Surgery, University of Michigan, Ann Arbor, Michigan.
Mark E PrinceDepartment of Otolaryngology/Head and Neck Surgery, University of Michigan, Ann Arbor, Michigan.
Douglas B ChepehaDepartment of Otolaryngology/Head and Neck Surgery, University of Michigan, Ann Arbor, Michigan.
Steven B ChinnDepartment of Otolaryngology/Head and Neck Surgery, University of Michigan, Ann Arbor, Michigan.
Robert L FerrisDepartment of Otolaryngology, University of Pittsburgh, Pittsburgh, Pennsylvania.
Susanne M GollinDepartment of Human Genetics, University of Pittsburgh, Pittsburgh, Pennsylvania.
Thomas K HoffmannDepartment of Otolaryngology, Heinrich Heine University, Dusseldorf, Germany.
Henning BierDepartment of Otolaryngology, Heinrich Heine University, Dusseldorf, Germany.
Ruud BrakenhoffDepartment of Otolaryngology/Head and Neck Surgery, VU University Medical Center, Amsterdam, The Netherlands.
Carol R BradfordDepartment of Otolaryngology/Head and Neck Surgery, University of Michigan, Ann Arbor, Michigan.
Thomas E CareyDepartment of Otolaryngology/Head and Neck Surgery, University of Michigan, Ann Arbor, Michigan.
University of Michigan Head and Neck Specialized Program of Research Excellence (SPORE) Program
University of Michigan–Ann Arbor · USUniversity of Pittsburgh · USAmsterdam UMC Location VUmc · NLDuke-NUS Medical School · SGTechnical University of Munich · DEUniversität Ulm · DE

Funding

XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI THEODORE S LAWRENCE · 1988 to 2026
$178.2M
WILD TYPE P53-BASED ADJUVANT IMMUNOTHERAPY FOR SCCHNP50CA097190 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CHRISTOPHER J. BAKKENIST · 2004 to 2026
$49.6M
Therapeutic Potential and Mechanism of Action of Potent Small Molecule InhibitorsP50CA097248 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WOLF, GREGORY T · 2002 to 2013
$25.3M
Scientific Synergy CoreP30DC005188 · NIDCD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DOLAN, DAVID FRANCIS · 2002 to 2016
$10.3M
Training Program in Tumor MicroenvironmentT32CA009676 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Maria G Castro, Analisa Virginia DiFeo · 1992 to 2026
$7.3M
Molecular Mechanisms of Tumor Behavior and Response to Therapy in HPV-positive Oropharyngeal CancerR01CA194536 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CAREY, THOMAS E. · 2016 to 2021
$2.8M
Biomarkers to Guide Treatment and Improve Survival in Oral/Oropharyngeal CancerR01DE019126 · NIDCR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CAREY, THOMAS E. · 2009 to 2012
$1.4M
NCI NIH HHS P30 CA046592NCI NIH HHS P50 CA097190NCI NIH HHS P50 CA097248NCI NIH HHS R01 CA194536NCI NIH HHS T32 CA009676NIDCD NIH HHS P30 DC005188NIDCR NIH HHS R01 DE019126
6 · The paper itself

Abstract

backgroundHuman papillomavirus (HPV)-positive oropharyngeal cancer is generally associated with excellent response to therapy, but some HPV-positive tumors progress despite aggressive therapy. The purpose of this study was to evaluate viral oncogene expression and viral integration sites in HPV16- and HPV18-positive squamous cell carcinoma lines.

methodsE6/E7 alternate transcripts were assessed by reverse transcriptase-polymerase chain reaction (RT-PCR). Detection of integrated papillomavirus sequences (DIPS-PCR) and sequencing identified viral insertion sites and affected host genes. Cellular gene expression was assessed across viral integration sites.

resultsAll HPV-positive cell lines expressed alternate HPVE6/E7 splicing indicative of active viral oncogenesis. HPV integration occurred within cancer-related genes TP63, DCC, JAK1, TERT, ATR, ETV6, PGR, PTPRN2, and TMEM237 in 8 head and neck squamous cell carcinoma (HNSCC) lines but UM-SCC-105 and UM-GCC-1 had only intergenic integration.

conclusionHPV integration into cancer-related genes occurred in 7 of 9 HPV-positive cell lines and of these 6 were from tumors that progressed. HPV integration into cancer-related genes may be a secondary carcinogenic driver in HPV-driven tumors. © 2017 Wiley Periodicals, Inc. Head Neck 39: 840-852, 2017.

Indexed as

Carcinoma, Squamous CellCell Culture TechniquesCell Line, TumorHead and Neck NeoplasmsHuman papillomavirus 16Human papillomavirus 18HumansOncogene Proteins, ViralVirus IntegrationOncogene Proteins, Viralcancerhead and neck squamous cell carcinoma (HNSCC)human papillomavirus (HPV)integrationoropharynx

Identifiers

PMID28236344
PMCPMC5392184
OpenAlexW2589237364

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.