Evidence map›Paper›PMID 28235826›Full record

ArticleG3 (Bethesda, Md.)2017

A New Reference Genome Assembly for the Microcrustacean

Zhiqiang Ye, Sen Xu, Ken Spitze, Jana Asselman, Xiaoqian Jiang, Matthew S Ackerman, Jacqueline Lopez, Brent Harker, R Taylor Raborn, W Kelley Thomas and 3 more

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
10.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 114 citations in OpenAlex.

  1. Article
  2. Article
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  4. The mutation landscape ofbioRxiv : the preprint server for biology · 2025
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  15. Article
  16. Scavenger receptor B2, a type III membrane pattern recognition receptor, senses LPS and activates the IMD pathway in crustaceans.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  17. Article
  18. Article
  19. High-quality genome ofiScience · 2023
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Zhiqiang YeDepartment of Biology, Indiana University, Bloomington, Indiana 47405 zhiqiang.yes@gmail.com.
Sen XuDepartment of Biology, Indiana University, Bloomington, Indiana 47405.
Ken SpitzeDepartment of Biology, Indiana University, Bloomington, Indiana 47405.
Jana AsselmanLaboratory for Environmental Toxicology, Ghent University, B-9000, Belgium.
Xiaoqian JiangDepartment of Biology, Indiana University, Bloomington, Indiana 47405.
Matthew S AckermanDepartment of Biology, Indiana University, Bloomington, Indiana 47405.
Jacqueline LopezNotre Dame Genomics and Bioinformatics Core Facility, University of Notre Dame, Indiana 46556.
Brent HarkerNotre Dame Genomics and Bioinformatics Core Facility, University of Notre Dame, Indiana 46556.
R Taylor RabornDepartment of Biology, Indiana University, Bloomington, Indiana 47405.
W Kelley ThomasHubbard Center for Genome Studies, University of New Hampshire, Durham, New Hampshire 03824.
Jordan RamsdellHubbard Center for Genome Studies, University of New Hampshire, Durham, New Hampshire 03824.
Michael E PfrenderDepartment of Biological Sciences, University of Notre Dame, Indiana 46556.
Michael LynchDepartment of Biology, Indiana University, Bloomington, Indiana 47405.
Indiana University Bloomington · USUniversity of Notre Dame · USUniversity of New Hampshire · USGhent University · BE

Funding

Causes and Population-genetic Consequences of Molecular VariationR35GM122566 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI Michael R LYNCH · 2017 to 2026
$7.7M
Population Genomics of Daphnia pulexR01GM101672 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI LYNCH, MICHAEL R · 2013 to 2016
$2.3M
NIGMS NIH HHS R01 GM101672NIGMS NIH HHS R35 GM122566
6 · The paper itself

Abstract

Comparing genomes of closely related genotypes from populations with distinct demographic histories can help reveal the impact of effective population size on genome evolution. For this purpose, we present a high quality genome assembly of

Indexed as

AnimalsDaphniaDNA Transposable ElementsIntronsMolecular Sequence AnnotationReference StandardsSensitivity and SpecificitySequence AlignmentWhole Genome SequencingDNA Transposable Elementseffective population sizegene numbergenome annotationintronmobile elements

Identifiers

PMID28235826
PMCPMC5427498
OpenAlexW2591188859

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.