Evidence map›Paper›PMID 28235043›Full record

ArticlePLoS pathogens2017

Hepatitis C virus infection inhibits a Src-kinase regulatory phosphatase and reduces T cell activation in vivo.

Nirjal Bhattarai, James H McLinden, Jinhua Xiang, M Meleah Mathahs, Warren N Schmidt, Thomas M Kaufman, Jack T Stapleton

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. Human Pegivirus Infection and Lymphoma Risk: A Systematic Review and Meta-analysis.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2020
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Association of donor hepatitis C virus infection status and risk of BK polyomavirus viremia after kidney transplantation.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2022
    Article
  8. Article
  9. Review
  10. Laboratory Diagnosis and Monitoring of Viral Hepatitis.Gastroenterology clinics of North America · 2019
    Review
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Nirjal BhattaraiResearch and Medical Services, Iowa City Veterans Affairs Medical Center, Iowa City, Iowa, United States of America.
James H McLindenResearch and Medical Services, Iowa City Veterans Affairs Medical Center, Iowa City, Iowa, United States of America.
Jinhua XiangResearch and Medical Services, Iowa City Veterans Affairs Medical Center, Iowa City, Iowa, United States of America.
M Meleah MathahsResearch and Medical Services, Iowa City Veterans Affairs Medical Center, Iowa City, Iowa, United States of America.
Warren N SchmidtResearch and Medical Services, Iowa City Veterans Affairs Medical Center, Iowa City, Iowa, United States of America.
Thomas M KaufmanResearch and Medical Services, Iowa City Veterans Affairs Medical Center, Iowa City, Iowa, United States of America.
Jack T StapletonResearch and Medical Services, Iowa City Veterans Affairs Medical Center, Iowa City, Iowa, United States of America.ORCID 0000-0002-2302-9055
University of Iowa · US

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Douglas Robert Spitz · 2000 to 2026
$70.0M
Neoplastic interactions of hepatitis C virus with telomerase.I01BX000159 · VA · IOWA CITY VA MEDICAL CENTER · PI SCHMIDT, WARREN N · 2009 to 2021
–
The effects of hepatitis C virus (HCV) E2 protein on host immunomodulationI01BX000207 · VA · IOWA CITY VA MEDICAL CENTER · PI STAPLETON, JACK T. · 2009 to 2025
–
GB Virus C and Non-Hodgkins Lymphoma Risk and PrognosisI01CX000821 · VA · IOWA CITY VA MEDICAL CENTER · PI STAPLETON, JACK T. · 2013 to 2016
–
BLRD VA I01 BX000159BLRD VA I01 BX000207BLRD VA I01 BX001241CSRD VA I01 CX000821
6 · The paper itself

Abstract

Among human RNA viruses, hepatitis C virus (HCV) is unusual in that it causes persistent infection in the majority of infected people. To establish persistence, HCV evades host innate and adaptive immune responses by multiple mechanisms. Recent studies identified virus genome-derived small RNAs (vsRNAs) in HCV-infected cells; however, their biological significance during human HCV infection is unknown. One such vsRNA arising from the hepatitis C virus (HCV) E2 coding region impairs T cell receptor (TCR) signaling by reducing expression of a Src-kinase regulatory phosphatase (PTPRE) in vitro. Since TCR signaling is a critical first step in T cell activation, differentiation, and effector function, its inhibition may contribute towards HCV persistence in vivo. The effect of HCV infection on PTPRE expression in vivo has not been examined. Here, we found that PTPRE levels were significantly reduced in liver tissue and peripheral blood mononuclear cells (PBMCs) obtained from HCV-infected humans compared to uninfected controls. Loss of PTPRE expression impaired antigen-specific TCR signaling, and curative HCV therapy restored PTPRE expression in PBMCs; restoring antigen-specific TCR signaling defects. The extent of PTPRE expression correlated with the amount of sequence complementarity between the HCV E2 vsRNA and the PTPRE 3' UTR target sites. Transfection of a hepatocyte cell line with full-length HCV RNA or with synthetic HCV vsRNA duplexes inhibited PTPRE expression, recapitulating the in vivo observation. Together, these data demonstrate that HCV infection reduces PTPRE expression in the liver and PBMCs of infected humans, and suggest that the HCV E2 vsRNA is a novel viral factor that may contribute towards viral persistence.

Indexed as

Enzyme-Linked Immunosorbent AssayHepacivirusHepatitis CHumansImmune EvasionImmunoblottingLymphocyte ActivationReceptor-Like Protein Tyrosine Phosphatases, Class 4Receptors, Antigen, T-CellRNA, ViralT-LymphocytesTransfectionPTPRE protein, humanReceptor-Like Protein Tyrosine Phosphatases, Class 4Receptors, Antigen, T-CellRNA, Viral

Identifiers

PMID28235043
PMCPMC5342304
OpenAlexW2590187572

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.