Evidence map›Paper›PMID 28234899›Full record

ArticlePLoS computational biology2017

On the stability and dynamics of stochastic spiking neuron models: Nonlinear Hawkes process and point process GLMs.

Felipe Gerhard, Moritz Deger, Wilson Truccolo

Abstract read
In one paragraph

Article in PLoS computational biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Stimulus-invariant aspects of the retinal code drive discriminability of natural scenes.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  5. Article
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  10. A self-exciting point process to study multicellular spatial signaling patterns.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Stability of stochastic finite-size spiking-neuron networks: Comparing mean-field, 1-loop correction and quasi-renewal approximations.Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference · 2019
    Article
  16. Stability of point process spiking neuron models.Journal of computational neuroscience · 2019
    Article
  17. Article
  18. Review
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

3 authors.

Felipe GerhardDepartment of Neuroscience, Brown University, Providence, Rhode Island, United States of America.ORCID 0000-0002-1733-3229
Moritz DegerSchool of Computer and Communication Sciences and School of Life Sciences, Brain Mind Institute, École polytechnique fédérale de Lausanne (EPFL), Lausanne, Switzerland.ORCID 0000-0002-2775-2611
Wilson TruccoloDepartment of Neuroscience, Brown University, Providence, Rhode Island, United States of America.

Funding

Multi-Scale Cortical Dynamics in Human EpilepsyR01NS079533 · NINDS · BROWN UNIVERSITY · PI TRUCCOLO, WILSON · 2012 to 2022
$3.4M
Brain Science Computer ClusterS10OD016366 · OD · BROWN UNIVERSITY · PI DONOGHUE, JOHN P · 2013 to 2013
$600k
Multi-Scale Cortical Dynamics and Seizure Prediction in Human Focal EpilepsyI01RX000668 · VA · PROVIDENCE VA MEDICAL CENTER · PI TRUCCOLO, WILSON · 2015 to 2018
–
NIH HHS S10 OD016366NINDS NIH HHS R01 NS079533RRD VA I01 RX000668
6 · The paper itself

Abstract

Point process generalized linear models (PP-GLMs) provide an important statistical framework for modeling spiking activity in single-neurons and neuronal networks. Stochastic stability is essential when sampling from these models, as done in computational neuroscience to analyze statistical properties of neuronal dynamics and in neuro-engineering to implement closed-loop applications. Here we show, however, that despite passing common goodness-of-fit tests, PP-GLMs estimated from data are often unstable, leading to divergent firing rates. The inclusion of absolute refractory periods is not a satisfactory solution since the activity then typically settles into unphysiological rates. To address these issues, we derive a framework for determining the existence and stability of fixed points of the expected conditional intensity function (CIF) for general PP-GLMs. Specifically, in nonlinear Hawkes PP-GLMs, the CIF is expressed as a function of the previous spike history and exogenous inputs. We use a mean-field quasi-renewal (QR) approximation that decomposes spike history effects into the contribution of the last spike and an average of the CIF over all spike histories prior to the last spike. Fixed points for stationary rates are derived as self-consistent solutions of integral equations. Bifurcation analysis and the number of fixed points predict that the original models can show stable, divergent, and metastable (fragile) dynamics. For fragile models, fluctuations of the single-neuron dynamics predict expected divergence times after which rates approach unphysiologically high values. This metric can be used to estimate the probability of rates to remain physiological for given time periods, e.g., for simulation purposes. We demonstrate the use of the stability framework using simulated single-neuron examples and neurophysiological recordings. Finally, we show how to adapt PP-GLM estimation procedures to guarantee model stability. Overall, our results provide a stability framework for data-driven PP-GLMs and shed new light on the stochastic dynamics of state-of-the-art statistical models of neuronal spiking activity.

Indexed as

Linear ModelsModels, NeurologicalStochastic ProcessesAction PotentialsAnimalsBiological ClocksComputer SimulationHumansMultivariate AnalysisNeuronsNonlinear DynamicsSignal Processing, Computer-Assisted

Identifiers

PMID28234899
PMCPMC5325182

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.