Evidence map›Paper›PMID 28233784›Full record

ArticleScientific reports2017

Prevalence and characteristics of pks genotoxin gene cluster-positive clinical Klebsiella pneumoniae isolates in Taiwan.

Ying-Tsong Chen, Yi-Chyi Lai, Mei-Chen Tan, Li-Yun Hsieh, Jann-Tay Wang, Yih-Ru Shiau, Hui-Ying Wang, Ann-Chi Lin, Jui-Fen Lai, I-Wen Huang and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 2 pooled it
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 2 syntheses or guidelines pooled it, 45 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  11. The making of hypervirulent Klebsiella pneumoniae.Journal of clinical laboratory analysis · 2022
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  12. Clinical and Microbiological Characteristics ofInfection and drug resistance · 2022
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  14. Prevalence of Cyclomodulin-PositivePathogens (Basel, Switzerland) · 2021
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  17. Prevalence and characteristics ofEpidemiology and infection · 2020
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  19. Serotyping ofInfection and drug resistance · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Ying-Tsong ChenInstitute of Genomics and Bioinformatics, National Chung Hsing University, Taichung, Taiwan.
Yi-Chyi LaiDepartment of Microbiology and Immunology, Chung-Shan Medical University, Taichung, Taiwan.
Mei-Chen TanNational Institute of Infectious Diseases and Vaccinology, National Health Research Institutes, Zhunan, 350 Taiwan.
Li-Yun HsiehNational Institute of Infectious Diseases and Vaccinology, National Health Research Institutes, Zhunan, 350 Taiwan.
Jann-Tay WangNational Institute of Infectious Diseases and Vaccinology, National Health Research Institutes, Zhunan, 350 Taiwan.
Yih-Ru ShiauNational Institute of Infectious Diseases and Vaccinology, National Health Research Institutes, Zhunan, 350 Taiwan.
Hui-Ying WangNational Institute of Infectious Diseases and Vaccinology, National Health Research Institutes, Zhunan, 350 Taiwan.
Ann-Chi LinInstitute of Genomics and Bioinformatics, National Chung Hsing University, Taichung, Taiwan.
Jui-Fen LaiNational Institute of Infectious Diseases and Vaccinology, National Health Research Institutes, Zhunan, 350 Taiwan.
I-Wen HuangNational Institute of Infectious Diseases and Vaccinology, National Health Research Institutes, Zhunan, 350 Taiwan.
Tsai-Ling LauderdaleNational Institute of Infectious Diseases and Vaccinology, National Health Research Institutes, Zhunan, 350 Taiwan.
National Health Research Institutes · TWChung Shan Medical University Hospital · TWNational Chung Hsing University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The pks gene cluster encodes enzymes responsible for the synthesis of colibactin, a genotoxin that has been shown to induce DNA damage and contribute to increased virulence. The present study investigated the prevalence of pks in clinical K. pneumoniae isolates from a national surveillance program in Taiwan, and identified microbiological and molecular factors associated with pks-carriage. The pks gene cluster was detected in 67 (16.7%) of 400 isolates from various specimen types. Multivariate analysis revealed that isolates of K1, K2, K20, and K62 capsular types (p < 0.001), and those more susceptible to antimicrobial agents (p = 0.001) were independent factors strongly associated with pks-carriage. Phylogenetic studies on the sequence type (ST) and pulsed-field gel electrophoresis patterns indicated that the pks-positive isolates belong to a clonal group of ST23 in K1, a locally expanding ST65 clone in K2, a ST268-related K20 group, and a highly clonal ST36:K62 group. Carriage of rmpA, iutC, and ybtA, the genes associated with hypervirulence, was significantly higher in the pks-positive isolates than the pks-negative isolates (95.5% vs. 13.2%, p < 0.001). Further studies to determine the presence of hypervirulent pks-bearing bacterial populations in the flora of community residents and their association with different disease entities may be warranted.

Indexed as

Multigene FamilyAdolescentAdultAgedBacterial ProteinsHumansKlebsiella InfectionsKlebsiella pneumoniaeMiddle AgedPeptidesPhylogenyPolyketidesPrevalenceTaiwanVirulenceVirulence FactorsBacterial ProteinscolibactinPeptidesPolyketidesVirulence Factors

Identifiers

PMID28233784
PMCPMC5324043
OpenAlexW2589779150

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.