Evidence map›Paper›PMID 28232749›Full record

ArticleNature communications2017

Genomic RNA folding mediates assembly of human parechovirus.

Shabih Shakeel, Eric C Dykeman, Simon J White, Ari Ora, Joseph J B Cockburn, Sarah J Butcher, Peter G Stockley, Reidun Twarock

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 90 citations in OpenAlex.

  1. Chemical reviews · 2026
    Review
  2. Article
  3. Pleomorphism in Wild-Type and Engineered PP7 Virus-Like Particles.Small (Weinheim an der Bergstrasse, Germany) · 2025
    Article
  4. Article
  5. Measuring the selective packaging of RNA molecules by viral coat proteins in cells.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Journal of virology · 2025
    Review
  7. Article
  8. Article
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  10. Review
  11. Review
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  13. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Shabih ShakeelInstitute of Biotechnology and Department of Biosciences, University of Helsinki, Helsinki, 00790, Finland.ORCID http://orcid.org/0000-0003-3651-6087
Eric C DykemanDepartments of Mathematics and Biology and York Centre for Complex Systems Analysis, University of York, York, YO10 5DD, UK.
Simon J WhiteAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, UK.
Ari OraInstitute of Biotechnology and Department of Biosciences, University of Helsinki, Helsinki, 00790, Finland.
Joseph J B CockburnAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, UK.
Sarah J ButcherInstitute of Biotechnology and Department of Biosciences, University of Helsinki, Helsinki, 00790, Finland. sarah.butcher@helsinki.fi.ORCID http://orcid.org/0000-0001-7060-5871
Peter G StockleyAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, UK. p.g.stockley@leeds.ac.uk.ORCID http://orcid.org/0000-0002-1360-2751
Reidun TwarockDepartments of Mathematics and Biology and York Centre for Complex Systems Analysis, University of York, York, YO10 5DD, UK. reidun.twarock@york.ac.uk.
University of Helsinki · FIUniversity of Leeds · GBUniversity of York · GB

Funding

Wellcome Trust 110145/Z/15/Z
6 · The paper itself

Abstract

Assembly of the major viral pathogens of the Picornaviridae family is poorly understood. Human parechovirus 1 is an example of such viruses that contains 60 short regions of ordered RNA density making identical contacts with the protein shell. We show here via a combination of RNA-based systematic evolution of ligands by exponential enrichment, bioinformatics analysis and reverse genetics that these RNA segments are bound to the coat proteins in a sequence-specific manner. Disruption of either the RNA coat protein recognition motif or its contact amino acid residues is deleterious for viral assembly. The data are consistent with RNA packaging signals playing essential roles in virion assembly. Their binding sites on the coat proteins are evolutionarily conserved across the Parechovirus genus, suggesting that they represent potential broad-spectrum anti-viral targets.The mechanism underlying packaging of genomic RNA into viral particles is not well understood for human parechoviruses. Here the authors identify short RNA motifs in the parechovirus genome that bind capsid proteins, providing approximately 60 specific interactions for virion assembly.

Indexed as

Genome, ViralVirus AssemblyAmino Acid MotifsBase PairingBinding SitesCapsid ProteinsComputational BiologyConserved SequenceGene ExpressionHumansModels, MolecularParechovirusProtein BindingReverse GeneticsRNA FoldingRNA, ViralCapsid ProteinsRNA, Viral

Identifiers

PMID28232749
PMCPMC5431903
OpenAlexW2586550625

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.