Evidence map›Paper›PMID 28232584›Full record

ArticlePlant physiology2017

Mechanism of Dual Targeting of the Phytochrome Signaling Component HEMERA/pTAC12 to Plastids and the Nucleus.

P Andrew Nevarez, Yongjian Qiu, Hitoshi Inoue, Chan Yul Yoo, Philip N Benfey, Danny J Schnell, Meng Chen

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
10.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 46 citations in OpenAlex.

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  18. Genome communication in plants mediated by organelle-n-ucleus-located proteins.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Review
  19. Article
  20. HCells · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

P Andrew NevarezDepartment of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, California 92521 (Y.Q., C.Y., M.C.).ORCID 0000-0001-5175-2542
Yongjian QiuDepartment of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, California 92521 (Y.Q., C.Y., M.C.).ORCID 0000-0002-1799-6305
Hitoshi InoueDepartment of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, California 92521 (Y.Q., C.Y., M.C.).ORCID 0000-0003-4988-337X
Chan Yul YooDepartment of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, California 92521 (Y.Q., C.Y., M.C.).ORCID 0000-0001-6159-7443
Philip N BenfeyDepartment of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, California 92521 (Y.Q., C.Y., M.C.).ORCID 0000-0001-5302-758X
Danny J SchnellDepartment of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, California 92521 (Y.Q., C.Y., M.C.).ORCID 0000-0002-6524-4159
Meng ChenDepartment of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, California 92521 (Y.Q., C.Y., M.C.); meng.chen@ucr.edu.ORCID 0000-0003-0351-5897
University of California, Riverside · US

Funding

ORGANIZATION AND FUNCTIONS OF CELLULAR STRUCTUREST32GM007184 · NIGMS · DUKE UNIVERSITY · PI JINKS-ROBERTSON, SUE · 1985 to 2019
$18.2M
Genetic Characterization of Phytochrome Nuclear Bodies in Plant Light SignalingR01GM087388 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI CHEN, MENG · 2010 to 2023
$5.8M
TOC COMPLEX IN PROTEIN TARGETING TO CHLOROPLASTSR01GM061893 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI SCHNELL, DANNY J. · 2000 to 2014
$3.2M
Acquisition of a Scalable Storage Cluster for Data Intensive NIH ResearchS10OD016290 · OD · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI GIRKE, THOMAS · 2014 to 2014
$593k
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM061893NIGMS NIH HHS R01 GM087388NIGMS NIH HHS T32 GM007184NIH HHS S10 OD016290
6 · The paper itself

Abstract

HEMERA (HMR) is a nuclear and plastidial dual-targeted protein. While it functions in the nucleus as a transcriptional coactivator in phytochrome signaling to regulate a distinct set of light-responsive, growth-relevant genes, in plastids it is known as pTAC12, which associates with the plastid-encoded RNA polymerase, and is essential for inducing the plastomic photosynthetic genes and initiating chloroplast biogenesis. However, the mechanism of targeting HMR to the nucleus and plastids is still poorly understood. Here, we show that HMR can be directly imported into chloroplasts through a transit peptide residing in the N-terminal 50 amino acids. Upon cleavage of the transit peptide and additional proteolytic processing, mature HMR, which begins from Lys-58, retains its biochemical properties in phytochrome signaling. Unexpectedly, expression of mature HMR failed to rescue not only the plastidial but also the nuclear defects of the

Indexed as

ArabidopsisArabidopsis ProteinsCell NucleusChloroplastsGene Expression Regulation, PlantImmunoblottingMicroscopy, ConfocalMutationPhytochromePlants, Genetically ModifiedPlastidsProtein TransportProteolysisReverse Transcriptase Polymerase Chain ReactionRibulose-Bisphosphate CarboxylaseSignal TransductionArabidopsis ProteinsHMR protein, ArabidopsisPhytochromeRibulose-Bisphosphate CarboxylaseTranscription Factors

Identifiers

PMID28232584
PMCPMC5373053
OpenAlexW2589413388

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.