Evidence map›Paper›PMID 28231282›Full record

ArticlePLoS computational biology2017

Mindboggling morphometry of human brains.

Arno Klein, Satrajit S Ghosh, Forrest S Bao, Joachim Giard, Yrjö Häme, Eliezer Stavsky, Noah Lee, Brian Rossa, Martin Reuter, Elias Chaibub Neto and 1 more

Abstract read
In one paragraph

Article in PLoS computational biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 397 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
397citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

397 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  15. Visual Responsivity in Autism: Measuring Visual Responses in Autistic and Non-Autistic Adults Using Psychophysics, fMRI, and EEG.Autism research : official journal of the International Society for Autism Research · 2026
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337 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Arno KleinChild Mind Institute, New York, New York, United States of America.ORCID 0000-0002-0707-2889
Satrajit S GhoshMcGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-5312-6729
Forrest S BaoDepartment of Electrical and Computer Engineering, University of Akron, Akron, Ohio, United States of America.
Joachim GiardUniversity of Louvain, Louvain, Belgium.
Yrjö HämeColumbia University, New York, New York, United States of America.ORCID 0000-0002-0698-0295
Eliezer StavskyColumbia University, New York, New York, United States of America.
Noah LeeColumbia University, New York, New York, United States of America.
Brian RossaTankThink Labs, Boston, Massachusetts, United States of America.
Martin ReuterHarvard Medical School, Cambridge, Massachusetts, United States of America.
Elias Chaibub NetoSage Bionetworks, Seattle, Washington, United States of America.
Anisha KeshavanUniversity of California San Francisco, San Francisco, California, United States of America.ORCID 0000-0003-3554-043X

Funding

Resource DiscoveryP41EB019936 · NIBIB · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI David Nelson Kennedy · 2016 to 2026
$15.2M
Biosignatures of Treatment Remission in Major DepressionU01MH092250 · NIMH · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MCGRATH, PATRICK J, PARSEY, RAMIN V. · 2010 to 2015
$8.9M
Connectomes Related to Anxiety and Depression in AdolescentsU01MH108168 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIELI, JOHN, WHITFIELD-GABRIELI, SUSAN · 2015 to 2019
$4.6M
Nipype: Dataflows for Reproducible Biomedical ResearchR01EB020740 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GHOSH, SATRAJIT SUJIT · 2016 to 2019
$2.7M
Genetic Determinants of Schizophrenia Intermediate PhenotypesR01MH092380 · NIMH · MASSACHUSETTS GENERAL HOSPITAL · PI PETRYSHEN, TRACEY · 2012 to 2015
$2.4M
Biological Predictors of Response to AntidepressantsR01MH074813 · NIMH · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PARSEY, RAMIN V. · 2006 to 2010
$2.3M
Mindboggling Shape Analysis and IdentificationR01MH084029 · NIMH · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KLEIN, ARNO · 2009 to 2011
$956k
NIBIB NIH HHS P41 EB019936NIBIB NIH HHS R01 EB020740NIMH NIH HHS R01 MH074813NIMH NIH HHS R01 MH084029NIMH NIH HHS R01 MH092380NIMH NIH HHS U01 MH092250NIMH NIH HHS U01 MH108168
6 · The paper itself

Abstract

Mindboggle (http://mindboggle.info) is an open source brain morphometry platform that takes in preprocessed T1-weighted MRI data and outputs volume, surface, and tabular data containing label, feature, and shape information for further analysis. In this article, we document the software and demonstrate its use in studies of shape variation in healthy and diseased humans. The number of different shape measures and the size of the populations make this the largest and most detailed shape analysis of human brains ever conducted. Brain image morphometry shows great potential for providing much-needed biological markers for diagnosing, tracking, and predicting progression of mental health disorders. Very few software algorithms provide more than measures of volume and cortical thickness, while more subtle shape measures may provide more sensitive and specific biomarkers. Mindboggle computes a variety of (primarily surface-based) shapes: area, volume, thickness, curvature, depth, Laplace-Beltrami spectra, Zernike moments, etc. We evaluate Mindboggle's algorithms using the largest set of manually labeled, publicly available brain images in the world and compare them against state-of-the-art algorithms where they exist. All data, code, and results of these evaluations are publicly available.

Indexed as

AlgorithmsAnatomic LandmarksBrainBrain DiseasesDiffusion Magnetic Resonance ImagingFemaleHumansImage Interpretation, Computer-AssistedImaging, Three-DimensionalMaleOrgan SizePattern Recognition, AutomatedReproducibility of ResultsSensitivity and SpecificitySoftwareSubtraction Technique

Identifiers

PMID28231282
PMCPMC5322885

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.