Evidence map›Paper›PMID 28231035›Full record

ReviewSLAS discovery : advancing life sciences R & D2017

Biologically Relevant Heterogeneity: Metrics and Practical Insights.

Albert Gough, Andrew M Stern, John Maier, Timothy Lezon, Tong-Ying Shun, Chakra Chennubhotla, Mark E Schurdak, Steven A Haney, D Lansing Taylor

Abstract readReview
In one paragraph

Review in SLAS discovery : advancing life sciences R & D, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed.

  1. Review
  2. Compact Tabletop Magnetic Resonance Elastography for Mapping Soft Tissue Viscoelasticity.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Single-cell hit calling in high-content imaging screens with Buscar.bioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Albert Gough1 Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA, USA.
Andrew M Stern1 Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA, USA.
John Maier3 Department of Family Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Timothy Lezon1 Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA, USA.
Tong-Ying Shun2 University of Pittsburgh Drug Discovery Institute, Pittsburgh, PA, USA.
Chakra Chennubhotla1 Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA, USA.
Mark E Schurdak1 Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA, USA.
Steven A Haney5 Eli Lilly and Company, Lilly Corporate Center, Indianapolis, IN, USA.
D Lansing Taylor1 Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA, USA.

Funding

VECTOR CORE FACILITYP30CA047904 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JOHN C. BYRD · 1988 to 2026
$158.0M
TrainingU54HG008540 · NHGRI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BAHAR, IVET, BERG, JEREMY M · 2014 to 2018
$12.8M
Measuring the Temporal-Spatial Responses of Dormancy and Drug Resistance in a Human Breast Cancer Metastatic Niche within a Liver-on-a-Chip Microphysiological PlatformUH3TR000503 · NCATS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI TAYLOR, D. LANSING · 2014 to 2016
$6.2M
Informatics Tools for Tumor Heterogeneity in Multiplexed Fluorescence ImagesU01CA204826 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SARACHAN, BRION DARYL, TAYLOR, D. LANSING · 2016 to 2018
$1.1M
InCell 6000 High Content Instrument for Cellular Systems Biology ProgramS10OD012269 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI TAYLOR, D. LANSING · 2013 to 2013
$502k
NCATS NIH HHS UH3 TR000503NCI NIH HHS P30 CA047904NCI NIH HHS U01 CA204826NHGRI NIH HHS U54 HG008540NIH HHS S10 OD012269
6 · The paper itself

Abstract

Heterogeneity is a fundamental property of biological systems at all scales that must be addressed in a wide range of biomedical applications, including basic biomedical research, drug discovery, diagnostics, and the implementation of precision medicine. There are a number of published approaches to characterizing heterogeneity in cells in vitro and in tissue sections. However, there are no generally accepted approaches for the detection and quantitation of heterogeneity that can be applied in a relatively high-throughput workflow. This review and perspective emphasizes the experimental methods that capture multiplexed cell-level data, as well as the need for standard metrics of the spatial, temporal, and population components of heterogeneity. A recommendation is made for the adoption of a set of three heterogeneity indices that can be implemented in any high-throughput workflow to optimize the decision-making process. In addition, a pairwise mutual information method is suggested as an approach to characterizing the spatial features of heterogeneity, especially in tissue-based imaging. Furthermore, metrics for temporal heterogeneity are in the early stages of development. Example studies indicate that the analysis of functional phenotypic heterogeneity can be exploited to guide decisions in the interpretation of biomedical experiments, drug discovery, diagnostics, and the design of optimal therapeutic strategies for individual patients.

Indexed as

Genetic HeterogeneityMachine LearningDecision MakingDecision Support TechniquesDrug DiscoveryFlow CytometryHistocytochemistryHumansImaging, Three-DimensionalNeoplasmsPrecision MedicineReference ValuesSingle-Cell AnalysisSystems Biologycellular modelscomputational pathologydrug discoveryflow cytometryheterogeneityhigh-content screeningorgans-on-chipsprecision medicinequantitative systems pharmacologysystems biology

Identifiers

PMID28231035
PMCPMC5464733

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.