Evidence map›Paper›PMID 28230179›Full record

ArticleScientific reports2017

Crowdsourcing scoring of immunohistochemistry images: Evaluating Performance of the Crowd and an Automated Computational Method.

Humayun Irshad, Eun-Yeong Oh, Daniel Schmolze, Liza M Quintana, Laura Collins, Rulla M Tamimi, Andrew H Beck

Open access · goldAbstract readComparative StudyEvaluation Study
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.2field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 8 citations in OpenAlex.

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  13. Scientific Discovery Games for Biomedical Research.Annual review of biomedical data science · 2019
    Article
  14. Cognitive and Non-Cognitive Outcomes Associated with Student Engagement in a Novel Brain Chemoarchitecture Mapping Course-Based Undergraduate Research Experience.Journal of undergraduate neuroscience education : JUNE : a publication of FUN, Faculty for Undergraduate Neuroscience · 2019
    Article
  15. Large-scale medical image annotation with crowd-powered algorithms.Journal of medical imaging (Bellingham, Wash.) · 2018
    Article
  16. Article
  17. Deep Learning and Its Applications in Biomedicine.Genomics, proteomics & bioinformatics · 2018
    Review
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Humayun IrshadBeth Israel Deaconess Medical Center, Harvard Medical School, Department of Pathology, Boston, 02115, USA.
Eun-Yeong OhKaiser-Permanente, Mid-Atlantic Group, Rockville, MD, USA.
Daniel SchmolzeCity of Hope National Medical Center, Duarte, CA, USA.
Liza M QuintanaBeth Israel Deaconess Medical Center, Harvard Medical School, Department of Pathology, Boston, 02115, USA.
Laura CollinsBeth Israel Deaconess Medical Center, Harvard Medical School, Department of Pathology, Boston, 02115, USA.
Rulla M TamimiHarvard School of Public Health, Department of Epidemiology, Boston, 02115, USA.
Andrew H BeckBeth Israel Deaconess Medical Center, Harvard Medical School, Department of Pathology, Boston, 02115, USA.
City Of Hope National Medical Center · USKaiser Permanente · US

Funding

Statistical MethodsP01CA087969 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI ROSNER, BERNARD A · 2000 to 2019
$77.8M
Long Term Multidisciplinary Study of Cancer in Women: The Nurses Health StudyUM1CA186107 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI ELIASSEN, A. HEATHER, STAMPFER, MEIR · 2014 to 2023
$22.3M
INFORMATICS METHODS AND MODELS FOR COMPUTATIONAL PATHOLOGYK22LM011931 · NLM · BETH ISRAEL DEACONESS MEDICAL CENTER · PI BECK, ANDREW H · 2014 to 2016
$476k
NCI NIH HHS P01 CA087969NCI NIH HHS UM1 CA186107NLM NIH HHS K22 LM011931
6 · The paper itself

Abstract

The assessment of protein expression in immunohistochemistry (IHC) images provides important diagnostic, prognostic and predictive information for guiding cancer diagnosis and therapy. Manual scoring of IHC images represents a logistical challenge, as the process is labor intensive and time consuming. Since the last decade, computational methods have been developed to enable the application of quantitative methods for the analysis and interpretation of protein expression in IHC images. These methods have not yet replaced manual scoring for the assessment of IHC in the majority of diagnostic laboratories and in many large-scale research studies. An alternative approach is crowdsourcing the quantification of IHC images to an undefined crowd. The aim of this study is to quantify IHC images for labeling of ER status with two different crowdsourcing approaches, image-labeling and nuclei-labeling, and compare their performance with automated methods. Crowdsourcing- derived scores obtained greater concordance with the pathologist interpretations for both image-labeling and nuclei-labeling tasks (83% and 87%), as compared to the pathologist concordance achieved by the automated method (81%) on 5,338 TMA images from 1,853 breast cancer patients. This analysis shows that crowdsourcing the scoring of protein expression in IHC images is a promising new approach for large scale cancer molecular pathology studies.

Indexed as

Biomarkers, TumorCrowdsourcingGene Expression ProfilingHumansImage Processing, Computer-AssistedImmunohistochemistryNeoplasmsOptical ImagingBiomarkers, Tumor

Identifiers

PMID28230179
PMCPMC5322394
OpenAlexW2470936259

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.