Evidence map›Paper›PMID 28230160›Full record

ArticleScientific reports2017

Global view of cognate kinase activation by the human pyruvate dehydrogenase complex.

Elena L Guevara, Luying Yang, Barbara Birkaya, Jieyu Zhou, Natalia S Nemeria, Mulchand S Patel, Frank Jordan

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Elena L GuevaraDepartment of Chemistry, Rutgers, The State University of New Jersey, Newark, New Jersey 07102, USA.
Luying YangDepartment of Chemistry, Rutgers, The State University of New Jersey, Newark, New Jersey 07102, USA.
Barbara BirkayaDepartment of Biochemistry, Jacob School of Medicine and Biomedical Sciences, University at Buffalo, The State University of New York, Buffalo, New York 14214, USA.
Jieyu ZhouDepartment of Chemistry, Rutgers, The State University of New Jersey, Newark, New Jersey 07102, USA.
Natalia S NemeriaDepartment of Chemistry, Rutgers, The State University of New Jersey, Newark, New Jersey 07102, USA.
Mulchand S PatelDepartment of Biochemistry, Jacob School of Medicine and Biomedical Sciences, University at Buffalo, The State University of New York, Buffalo, New York 14214, USA.
Frank JordanDepartment of Chemistry, Rutgers, The State University of New Jersey, Newark, New Jersey 07102, USA.
Rutgers, The State University of New Jersey · USUniversity at Buffalo, State University of New York · US

Funding

STRUCTURE AND MECHANISM OF YEAST PYRUVATE DECARBOXYLASER01GM050380 · NIGMS · RUTGERS THE STATE UNIV OF NJ NEWARK · PI JORDAN, FRANK · 1993 to 2013
$3.0M
Mechanistic Issues Related to Aging on Human 2-Oxoglutarate Dehydrogenase ComplexR15GM116077 · NIGMS · RUTGERS THE STATE UNIV OF NJ NEWARK · PI JORDAN, FRANK · 2015 to 2015
$369k
Mechanism and Interactions of Human Pyruvate Dehydrogenase Complex with its Kinase 1.F31GM113601 · NIGMS · RUTGERS THE STATE UNIV OF NJ NEWARK · PI GUEVARA TALARICO, ELENA LUISA · 2015 to 2016
$60k
NIGMS NIH HHS F31 GM113601NIGMS NIH HHS R01 GM050380NIGMS NIH HHS R15 GM116077
6 · The paper itself

Abstract

The human pyruvate dehydrogenase complex (PDC) comprises four multidomain components, E1, E3, E2 and an E3-binding protein (E3BP), the latter two forming the core as E2·E3BP sub-complex. Pyruvate flux through PDC is regulated via phosphorylation (inactivation) at E1 by four PDC kinases (PDKs), and reactivation by two PDC phosphatases. Up-regulation of PDK isoform gene expression is reported in several forms of cancer, while PDKs may be further activated by PDC by binding to the E2·E3BP core. Hence, the PDK: E2·E3BP interaction provides new therapeutic targets. We carried out both functional kinetic and thermodynamic studies to demonstrate significant differences in the activation of PDK isoforms by binding to the E2·E3BP core: (i) PDK2 needs no activation by E2·E3BP for efficient functioning, while PDK4 was the least effective of the four isoforms, and could not be activated by E2·E3BP. Hence, development of inhibitors to the interaction of PDK2 and PDK4 with E2·E3BP is not promising; (ii) Design of inhibitors to interfere with interaction of E2·E3BP with PDK1 and PDK3 is promising. PDK3 needs E2·E3BP core for activation, an activation best achieved by synergistic combination of E2-derived catalytic domain and tridomain.

Indexed as

Catalytic DomainHumansIsoenzymesProtein BindingProtein Kinase InhibitorsProtein Serine-Threonine KinasesPyruvate Dehydrogenase Acetyl-Transferring KinasePyruvate Dehydrogenase ComplexThermodynamicsIsoenzymesPDK1 protein, humanPDK2 protein, humanPDK3 protein, humanPDK4 protein, humanProtein Kinase InhibitorsProtein Serine-Threonine KinasesPyruvate Dehydrogenase Acetyl-Transferring KinasePyruvate Dehydrogenase Complex

Identifiers

PMID28230160
PMCPMC5322387
OpenAlexW2590703204

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.