Evidence map›Paper›PMID 28228643›Full record

ReviewNature reviews. Cancer2017

A chemical probe toolbox for dissecting the cancer epigenome.

Jake Shortt, Christopher J Ott, Ricky W Johnstone, James E Bradner

Erratum issuedAbstract readReview
PubMed Publisher
In one paragraph

Review in Nature reviews. Cancer, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 93 citations in OpenAlex.

  1. Review
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  8. Rationally designed chimeric PI3K-BET bromodomain inhibitors elicit curative responses in MYC-driven lymphoma.Proceedings of the National Academy of Sciences of the United States of America · 2023
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  18. Loss of Methylation Modification Marks the Presence of Psoriasis.The Journal of investigative dermatology · 2020
    Article
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  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Jake ShorttGene Regulation Laboratory, Research Division, Peter MacCallum Cancer Centre, Melbourne 3000, Australia.
Christopher J OttDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
Ricky W JohnstoneGene Regulation Laboratory, Research Division, Peter MacCallum Cancer Centre, Melbourne 3000, Australia.
James E BradnerDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
Dana-Farber Cancer Institute · USPeter MacCallum Cancer Centre · AU

Funding

TYROSINE KINASE ONCOGENESIS IN MYELOID LEUKEMIAP01CA066996 · NCI · DANA-FARBER CANCER INSTITUTE · PI DANIEL J DEANGELO · 1996 to 2026
$52.5M
Targeting to Epigenetic Modications in ALLR01CA176745 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI ARMSTRONG, SCOTT A, QI, JUN · 2012 to 2022
$4.2M
Chemical Modulation of Chromatin Signaling in Lymphoid MalignanciesK99CA190861 · NCI · DANA-FARBER CANCER INST · PI OTT, CHRISTOPHER J · 2014 to 2015
$196k
NCI NIH HHS K99 CA190861NCI NIH HHS P01 CA066996NCI NIH HHS R01 CA176745
6 · The paper itself

Abstract

Cancer cell hallmarks are underpinned by transcriptional programmes operating in the context of a dynamic and complicit epigenomic environment. Somatic alterations of chromatin modifiers are among the most prevalent cancer perturbations. There is a pressing need for targeted chemical probes to dissect these complex, interconnected gene regulatory circuits. Validated chemical probes empower mechanistic research while providing the pharmacological proof of concept that is required to translate drug-like derivatives into therapy for cancer patients. In this Review, we describe chemical probe development for epigenomic effector proteins that are linked to cancer pathogenesis. By annotating these reagents, we aim to share our perspectives on an informative 'epigenomic toolbox' of broad utility to the research community.

Indexed as

EpigenomicsAnimalsDNA MethylationEnhancer of Zeste Homolog 2 ProteinHistone AcetyltransferasesHistone DemethylasesHistone-Lysine N-MethyltransferaseHistone MethyltransferasesHumansNeoplasmsSirtuinsEnhancer of Zeste Homolog 2 ProteinEZH2 protein, humanHistone AcetyltransferasesHistone DemethylasesHistone-Lysine N-MethyltransferaseHistone MethyltransferasesSirtuins

Identifiers

PMID28228643
OpenAlexW2590124607

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.