Evidence map›Paper›PMID 28225766›Full record

ArticlePloS one2017

Marine Actinobacteria as a source of compounds for phytopathogen control: An integrative metabolic-profiling / bioactivity and taxonomical approach.

Luz A Betancur, Sandra J Naranjo-Gaybor, Diana M Vinchira-Villarraga, Nubia C Moreno-Sarmiento, Luis A Maldonado, Zulma R Suarez-Moreno, Alejandro Acosta-González, Gillermo F Padilla-Gonzalez, Mónica Puyana, Leonardo Castellanos and 1 more

Abstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

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  15. Metabolomics on the study of marine organisms.Metabolomics : Official journal of the Metabolomic Society · 2022
    Review
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Luz A BetancurUniversidad Nacional de Colombia, Sede Bogotá, Departamento de Química, Carrera, Edificio de Química of 427, Bogotá, Colombia.
Sandra J Naranjo-GayborUniversidad Nacional de Colombia, Sede Bogotá, Departamento de Química, Carrera, Edificio de Química of 427, Bogotá, Colombia.
Diana M Vinchira-VillarragaUniversidad Nacional de Colombia, Sede Bogotá, Departamento de Química, Carrera, Edificio de Química of 427, Bogotá, Colombia.
Nubia C Moreno-SarmientoUniversidad Nacional de Colombia, Sede Bogotá, Departamento de Química, Carrera, Edificio de Química of 427, Bogotá, Colombia.
Luis A MaldonadoUniversidad Autónoma Metropolitana Rectoría-Secretaría General, Prolongación Canal de Miramontes, Col. Ex-hacienda San Juan de Dios, Tlalpan, México DF.
Zulma R Suarez-MorenoInvestigación y Desarrollo, Empresa Colombiana de Productos Veterinarios VECOL S.A., Bogotá D.C.
Alejandro Acosta-GonzálezUniversidad de la Sabana, Facultad de Ingeniería, Autopista Norte, Chía, Cundinamarca, Colombia.
Gillermo F Padilla-GonzalezUniversidade de São Paulo, Faculdade de Ciências Farmacêuticas de Ribeirão Preto, Av. do de Sao Paulo, Faculdade de Ciências Farmacêuticas de Ribeirão Preto, Av. do Café, Ribeirão Preto-SP, Brazil.
Mónica PuyanaDepartamento de Ciencias Biológicas y Ambientales, Programa de Biología Marina, Universidad Jorge Tadeo Lozano, Carrera, Modulo, Oficina, Bogotá, Colombia.
Leonardo CastellanosUniversidad Nacional de Colombia, Sede Bogotá, Departamento de Química, Carrera, Edificio de Química of 427, Bogotá, Colombia.
Freddy A RamosUniversidad Nacional de Colombia, Sede Bogotá, Departamento de Química, Carrera, Edificio de Química of 427, Bogotá, Colombia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Marine bacteria are considered as promising sources for the discovery of novel biologically active compounds. In this study, samples of sediment, invertebrate and algae were collected from the Providencia and Santa Catalina coral reef (Colombian Caribbean Sea) with the aim of isolating Actinobateria-like strain able to produce antimicrobial and quorum quenching compounds against pathogens. Several approaches were used to select actinobacterial isolates, obtaining 203 strains from all samples. According to their 16S rRNA gene sequencing, a total of 24 strains was classified within Actinobacteria represented by three genera: Streptomyces, Micromonospora, and Gordonia. In order to assess their metabolic profiles, the actinobacterial strains were grown in liquid cultures, and LC-MS-based analyses from ethyl acetate fractions were performed. Based on taxonomical classification, screening information of activity against phytopathogenic strains and quorum quenching activity, as well as metabolic profiling, six out of the 24 isolates were selected for follow-up with chemical isolation and structure identification analyses of putative metabolites involved in antimicrobial activities.

Indexed as

MetabolomicsActinobacteriaBiodiversityCaribbean RegionDNA, BacterialRNA, Ribosomal, 16SDNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID28225766
PMCPMC5321270

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.