Evidence map›Paper›PMID 28225587›Full record

ArticleAnalytical chemistry2017

compMS2Miner: An Automatable Metabolite Identification, Visualization, and Data-Sharing R Package for High-Resolution LC-MS Data Sets.

William M B Edmands, Lauren Petrick, Dinesh K Barupal, Augustin Scalbert, Mark J Wilson, Jeffrey K Wickliffe, Stephen M Rappaport

Open access · greenAbstract read
In one paragraph

Article in Analytical chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  4. Review
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  8. Review
  9. Article
  10. Redefining environmental exposure for disease etiology.NPJ systems biology and applications · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

William M B EdmandsRappaport Lab, UC Berkeley, School of Public Health , GL81 Koshland Hall, Berkeley, California 94720, United States.ORCID 0000-0003-4633-8173
Lauren PetrickRappaport Lab, UC Berkeley, School of Public Health , GL81 Koshland Hall, Berkeley, California 94720, United States.
Dinesh K BarupalMetabolomics FiehnLab, NIH West-Coast Metabolomics Center (WCMC), University of California Davis , Davis, California 95616 United States.
Augustin ScalbertInternational Agency for Research on Cancer (IARC) , Nutrition and Metabolism Section (NME), Biomarkers Group (BMA), 150 Cours Albert Thomas, F-69372 Lyon Cedex 08, France.
Mark J WilsonDepartment of Global Environmental Health Sciences, Tulane University , 1440 Canal Street, Suite 2100 No. 8360, New Orleans, Louisiana 70112 United States.
Jeffrey K WickliffeDepartment of Global Environmental Health Sciences, Tulane University , 1440 Canal Street, Suite 2100 No. 8360, New Orleans, Louisiana 70112 United States.
Stephen M RappaportRappaport Lab, UC Berkeley, School of Public Health , GL81 Koshland Hall, Berkeley, California 94720, United States.ORCID 0000-0002-3806-0848
University of California, Berkeley · USTulane University · USCentre international de recherche sur le cancer · FRUniversity of California, Davis · US

Funding

Training CoreP42ES004705 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MORELLO-FROSCH, RACHEL ADELE · 1987 to 2025
$74.6M
Project 3 - Prenatal Exposures, Constitutive Genetics, DNA Methylation & Childhood LeukemiaP50ES018172 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI METAYER, CATHERINE · 2015 to 2019
$3.8M
NIEHS NIH HHS P42 ES004705NIEHS NIH HHS P50 ES018172World Health Organization 001
6 · The paper itself

Abstract

A long-standing challenge of untargeted metabolomic profiling by ultrahigh-performance liquid chromatography-high-resolution mass spectrometry (UHPLC-HRMS) is efficient transition from unknown mass spectral features to confident metabolite annotations. The compMS

Indexed as

AutomationDatasets as TopicInformation DisseminationMetabolomicsSoftwareAnimalsChromatography, High Pressure LiquidMaleMass SpectrometryMiceMice, Inbred C57BL

Identifiers

PMID28225587
PMCPMC6338221
OpenAlexW2591392964

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.