Evidence map›Paper›PMID 28224992›Full record

ArticleEuropean journal of human genetics : EJHG2017

Diagnostic exome sequencing in 266 Dutch patients with visual impairment.

Lonneke Haer-Wigman, Wendy Ag van Zelst-Stams, Rolph Pfundt, L Ingeborgh van den Born, Caroline Cw Klaver, Joke Bgm Verheij, Carel B Hoyng, Martijn H Breuning, Camiel Jf Boon, Anneke J Kievit and 15 more

Open access · hybridAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed, 1 pooled it
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 1 synthesis or guideline pooled it, 150 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Whole genome sequencing for inherited retinal diseases in the Korean National Project of Bio Big Data.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2024
    Article
  16. Article
  17. Clinical and Molecular Aspects of C2orf71/PCARE in Retinal Diseases.International journal of molecular sciences · 2023
    Review
  18. Review
  19. Article
  20. Article

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 11 institutions in 1 country.

Lonneke Haer-WigmanDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Wendy Ag van Zelst-StamsDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Rolph PfundtDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
L Ingeborgh van den BornRotterdam Eye Hospital, Rotterdam, The Netherlands.
Caroline Cw KlaverDepartment of Ophthalmology, Erasmus Medical Center, Rotterdam, The Netherlands.
Joke Bgm VerheijDepartment of Medical Genetics, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands.
Carel B HoyngDepartment of Ophthalmology, Radboud University Medical Center, Nijmegen, The Netherlands.
Martijn H BreuningDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Camiel Jf BoonDepartment of Ophthalmology, Leiden University Medical Center, Leiden, The Netherlands.
Anneke J KievitDepartment of Clinical Genetics, Erasmus Medical Center, Rotterdam, The Netherlands.
Virginie Jm VerhoevenDepartment of Ophthalmology, Erasmus Medical Center, Rotterdam, The Netherlands.
Jan Wr PottDepartment of Ophthalmology, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands.
Suzanne Ceh SalleveltDepartment of Clinical Genetics, Maastricht University Medical Center, Maastricht, The Netherlands.
Johanna M van HagenDepartment of Clinical Genetics, VU University Medical Center, Amsterdam, The Netherlands.
Astrid S PlompDepartment of Clinical Genetics, Academic Medical Center, Amsterdam, The Netherlands.
Hester Y KroesDepartment of Medical Genetics, University Medical Center Utrecht, Utrecht, The Netherlands.
Stefan H LelieveldDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Jayne Y Hehir-KwaDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Steven CasteleinDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Marcel NelenDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Hans SchefferDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Dorien LugtenbergDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Frans Pm CremersDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Lies HoefslootDepartment of Clinical Genetics, Erasmus Medical Center, Rotterdam, The Netherlands.
Helger G YntemaDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Erasmus MC · NLRadboud Institute for Molecular Life Sciences · NLRadboud University Medical Center · NLRadboud University Nijmegen · NLLeiden University Medical Center · NLUniversity Medical Center Groningen · NLAcademic Medical Center · NLAmsterdam UMC Location VUmc · NLMaastricht University · NLRotterdam Eye Hospital · NLUniversity Medical Center Utrecht · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Inherited eye disorders have a large clinical and genetic heterogeneity, which makes genetic diagnosis cumbersome. An exome-sequencing approach was developed in which data analysis was divided into two steps: the vision gene panel and exome analysis. In the vision gene panel analysis, variants in genes known to cause inherited eye disorders were assessed for pathogenicity. If no causative variants were detected and when the patient consented, the entire exome data was analyzed. A total of 266 Dutch patients with different types of inherited eye disorders, including inherited retinal dystrophies, cataract, developmental eye disorders and optic atrophy, were investigated. In the vision gene panel analysis (likely), causative variants were detected in 49% and in the exome analysis in an additional 2% of the patients. The highest detection rate of (likely) causative variants was in patients with inherited retinal dystrophies, for instance a yield of 63% in patients with retinitis pigmentosa. In patients with developmental eye defects, cataract and optic atrophy, the detection rate was 50, 33 and 17%, respectively. An exome-sequencing approach enables a genetic diagnosis in patients with different types of inherited eye disorders using one test. The exome approach has the same detection rate as targeted panel sequencing tests, but offers a number of advantages. For instance, the vision gene panel can be frequently and easily updated with additional (novel) eye disorder genes. Determination of the genetic diagnosis improved the clinical diagnosis, regarding the assessment of the inheritance pattern as well as future disease perspective.

Indexed as

ExomeInheritance PatternsAdolescentAdultCase-Control StudiesChildEye Diseases, HereditaryHumansNetherlandsVision Disorders

Identifiers

PMID28224992
PMCPMC5437915
OpenAlexW2590782456

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.