Evidence map›Paper›PMID 28224978›Full record

ArticleScientific reports2017

Methylated-antibody affinity purification to improve proteomic identification of plant RNA polymerase Pol V complex and the interacting proteins.

Guochen Qin, Jun Ma, Xiaomei Chen, Zhaoqing Chu, Yi-Min She

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Histone acetylation recruits the SWR1 complex to regulate active DNA demethylation inProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Guochen QinShanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 3888 Chenhua Road, Shanghai 201602, P. R. China.
Jun MaShanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 3888 Chenhua Road, Shanghai 201602, P. R. China.
Xiaomei ChenShanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 3888 Chenhua Road, Shanghai 201602, P. R. China.
Zhaoqing ChuShanghai Chenshan Plant Science Research Center and Shanghai Chenshan Botanic Garden, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 3888 Chenhua Road, Shanghai 201602, P. R. China.
Yi-Min SheShanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 3888 Chenhua Road, Shanghai 201602, P. R. China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Affinity purification followed by enzymatic digestion and mass spectrometry has been widely utilized for the sensitive detection of interacting proteins and protein complexes in various organisms. In plants, the method is technically challenging due to the low abundance proteins, non-specific binding and difficulties of eluting interacting proteins from antibody beads. In this report, we describe a strategy to modify antibodies by reductive methylation of lysines without affecting their binding properties, followed by on-bead digestion of bound proteins with endoproteinase Lys-C. By this method, the antibody remains intact and does not interfere with the downstream identification of interacting proteins. Non-specific binding proteins were excluded using

Indexed as

Amino Acid SequenceAntibodiesArabidopsisArabidopsis ProteinsChromatography, AffinityChromatography, High Pressure LiquidDNA-Directed RNA PolymerasesIsotope LabelingMethylationPeptidesPlants, Genetically ModifiedProtein Interaction MapsProtein SubunitsTandem Mass SpectrometryAntibodiesArabidopsis ProteinsDNA-Directed RNA PolymerasesPeptidesProtein SubunitsRNA polymerase V, Arabidopsis

Identifiers

PMID28224978
PMCPMC5320500

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.