Evidence map›Paper›PMID 28223520›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Membrane integration of an essential β-barrel protein prerequires burial of an extracellular loop.

Joseph S Wzorek, James Lee, David Tomasek, Christine L Hagan, Daniel E Kahne

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. A mechanism for substrate quality control in outer membrane protein assembly.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Review
  4. Exploring the Terra incognita of AI-based domain classifications.Protein science : a publication of the Protein Society · 2025
    Article
  5. Native β-barrel substrates pass through two shared intermediates during folding on the BAM complex.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Review
  7. Recombinant Expression and Overproduction of Transmembrane β-Barrel Proteins.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  8. Review
  9. The sacrificial adaptor protein Skp functions to remove stalled substrates from the β-barrel assembly machine.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Article
  11. The assembly of β-barrel outer membrane proteins.Current opinion in microbiology · 2021
    Review
  12. The gain-of-function alleleProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Fine-Tuning of σJournal of bacteriology · 2019
    Article
  17. Review
  18. Article
  19. Inhibitor of intramembrane protease RseP blocks the σProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Joseph S WzorekDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138.
James LeeDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138.
David TomasekDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138.
Christine L HaganDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138.
Daniel E KahneDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138; kahne@chemistry.harvard.edu.

Funding

Training in Molecular, Cellular, and Chemical BiologyT32GM007598 · NIGMS · HARVARD UNIVERSITY · PI DULAC, CATHERINE · 1985 to 2019
$16.2M
Outer Membrane Biogenesis: New Antibiotic TargetsR01AI081059 · NIAID · HARVARD UNIVERSITY · PI Daniel Kahne · 2009 to 2026
$9.5M
Substrate Recognition by the Bam ComplexF32GM108258 · NIGMS · HARVARD UNIVERSITY · PI WZOREK, JOSEPH · 2014 to 2015
$106k
Mapping the pathway of membrane β-barrel protein folding by the Bam complex.F31GM116210 · NIGMS · HARVARD UNIVERSITY · PI LEE, JAMES · 2016 to 2017
$63k
NIAID NIH HHS R01 AI081059NIGMS NIH HHS F31 GM116210NIGMS NIH HHS F32 GM108258NIGMS NIH HHS T32 GM007598
6 · The paper itself

Abstract

The Bam complex assembles β-barrel proteins into the outer membrane (OM) of Gram-negative bacteria. These proteins comprise cylindrical β-sheets with long extracellular loops and create pores to allow passage of nutrients and waste products across the membrane. Despite their functional importance, several questions remain about how these proteins are assembled into the OM after their synthesis in the cytoplasm and secretion across the inner membrane. To understand this process better, we studied the assembly of an essential β-barrel substrate for the Bam complex, BamA. By mutating conserved residues in the β-barrel domain of this protein, we generated three assembly-defective BamA substrates that stall early in the folding process in the periplasm. Two of the three defective substrates, which harbor mutations within β-strands, fail to associate productively with the Bam complex. The third substrate, which harbors mutations in a conserved extracellular loop, accumulates on BamD during assembly, but does not integrate efficiently into the membrane. The assembly of all three substrates can be restored by artificially tethering a region of the substrate, which ultimately becomes an extracellular loop, to the lumen of the forming β-barrel. These results imply that a critical step in the folding process involves the interaction of residues on the interior of the nascent β-barrel wall with residues in one of the extracellular loops. We conclude that a prerequisite for membrane integration of β-barrel proteins is burial of the extracellular loops within the forming β-barrel.

Indexed as

Protein FoldingBacterial Outer Membrane ProteinsEscherichia coliEscherichia coli ProteinsMembranesMultiprotein ComplexesPeriplasmProtein Conformation, beta-StrandSubstrate SpecificityBacterial Outer Membrane ProteinsBamA protein, E coliEscherichia coli ProteinsMultiprotein ComplexesBam complexouter membraneprotein foldingβ-barrel

Identifiers

PMID28223520
PMCPMC5347601

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.