Evidence map›Paper›PMID 28223208›Full record

ReviewProgress in retinal and eye research2017

Characterizing the "POAGome": A bioinformatics-driven approach to primary open-angle glaucoma.

Ian D Danford, Lana D Verkuil, Daniel J Choi, David W Collins, Harini V Gudiseva, Katherine E Uyhazi, Marisa K Lau, Levi N Kanu, Gregory R Grant, Venkata R M Chavali and 1 more

Abstract readReview
In one paragraph

Review in Progress in retinal and eye research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 105 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Ian D DanfordScheie Eye Institute, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Lana D VerkuilScheie Eye Institute, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Daniel J ChoiScheie Eye Institute, University of Pennsylvania, Philadelphia, PA, 19104, USA.
David W CollinsScheie Eye Institute, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Harini V GudisevaScheie Eye Institute, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Katherine E UyhaziScheie Eye Institute, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Marisa K LauScheie Eye Institute, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Levi N KanuScheie Eye Institute, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Gregory R GrantDepartment of Genetics, University of Pennsylvania, Philadelphia, PA, USA, Penn Center for Bioinformatics, University of Pennsylvania, Philadelphia, PA, USA.
Venkata R M ChavaliScheie Eye Institute, University of Pennsylvania, Philadelphia, PA, 19104, USA. Electronic address: vchavali@mail.med.upenn.edu.
Joan M O'BrienScheie Eye Institute, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Penn Presbyterian Medical Center · USUniversity of Pennsylvania · US

Funding

Scientific TransparencyP30EY001583 · NEI · UNIVERSITY OF PENNSYLVANIA · PI CLAIRE H MITCHELL · 1985 to 2026
$19.5M
Primary Open Angle African-American Glaucoma Genetics Study RenewalR01EY023557 · NEI · UNIVERSITY OF PENNSYLVANIA · PI O'BRIEN, JOAN M · 2014 to 2025
$18.1M
NEI NIH HHS HHSN263201200001CNEI NIH HHS P30 EY001583NEI NIH HHS R01 EY023557NIH HHS HHSN263201200001E
6 · The paper itself

Abstract

Primary open-angle glaucoma (POAG) is a genetically, physiologically, and phenotypically complex neurodegenerative disorder. This study addressed the expanding collection of genes associated with POAG, referred to as the "POAGome." We used bioinformatics tools to perform an extensive, systematic literature search and compiled 542 genes with confirmed associations with POAG and its related phenotypes (normal tension glaucoma, ocular hypertension, juvenile open-angle glaucoma, and primary congenital glaucoma). The genes were classified according to their associated ocular tissues and phenotypes, and functional annotation and pathway analyses were subsequently performed. Our study reveals that no single molecular pathway can encompass the pathophysiology of POAG. The analyses suggested that inflammation and senescence may play pivotal roles in both the development and perpetuation of the retinal ganglion cell degeneration seen in POAG. The TGF-β signaling pathway was repeatedly implicated in our analyses, suggesting that it may be an important contributor to the manifestation of POAG in the anterior and posterior segments of the globe. We propose a molecular model of POAG revolving around TGF-β signaling, which incorporates the roles of inflammation and senescence in this disease. Finally, we highlight emerging molecular therapies that show promise for treating POAG.

Indexed as

Glaucoma, Open-AngleComputational BiologyHumansIntraocular PressureRetinal Ganglion CellsGliosisNeurodegenerationNeuroinflammationNFκBPrimary open-angle glaucoma (POAG)SenescenceSenescence-associated secretory phenotype (SASP)TGF-β

Identifiers

PMID28223208
PMCPMC5464971
OpenAlexW2590786441

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.