Evidence map›Paper›PMID 28222718›Full record

ArticleBMC medicine2017

Abnormal epigenetic changes during differentiation of human skeletal muscle stem cells from obese subjects.

Cajsa Davegårdh, Christa Broholm, Alexander Perfilyev, Tora Henriksen, Sonia García-Calzón, Lone Peijs, Ninna Schiøler Hansen, Petr Volkov, Rasmus Kjøbsted, Jørgen F P Wojtaszewski and 10 more

Open access · goldAbstract read
In one paragraph

Article in BMC medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 76 citations in OpenAlex.

  1. Review
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  8. Research progress on the effects of adverse exposure during pregnancy on skeletal muscle function in the offspring.Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2023
    Review
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  16. Biomolecules · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 4 countries.

Cajsa DavegårdhDepartment of Clinical Sciences, Lund University Diabetes Centre, Lund University, Malmö, 205 02, Sweden.ORCID 0000-0003-1124-7570
Christa BroholmDepartment of Endocrinology, Rigshospitalet, Copenhagen, 2100, Denmark.
Alexander PerfilyevDepartment of Clinical Sciences, Lund University Diabetes Centre, Lund University, Malmö, 205 02, Sweden.
Tora HenriksenThe Centre of Inflammation and Metabolism and the Centre for Physical Activity Research, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark.
Sonia García-CalzónDepartment of Clinical Sciences, Lund University Diabetes Centre, Lund University, Malmö, 205 02, Sweden.
Lone PeijsThe Centre of Inflammation and Metabolism and the Centre for Physical Activity Research, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark.
Ninna Schiøler HansenDepartment of Endocrinology, Rigshospitalet, Copenhagen, 2100, Denmark.
Petr VolkovDepartment of Clinical Sciences, Lund University Diabetes Centre, Lund University, Malmö, 205 02, Sweden.
Rasmus KjøbstedDepartment of Exercise and Sports Sciences, Faculty of Health, University of Copenhagen, Copenhagen, Denmark.
Jørgen F P WojtaszewskiDepartment of Exercise and Sports Sciences, Faculty of Health, University of Copenhagen, Copenhagen, Denmark.
Maria PedersenThe Centre of Inflammation and Metabolism and the Centre for Physical Activity Research, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark.
Bente Klarlund PedersenThe Centre of Inflammation and Metabolism and the Centre for Physical Activity Research, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark.
Dov B BallakDepartment of Integrative Physiology, University of Colorado Boulder, Boulder, CO, 80309, USA.
Charles A DinarelloDepartment of Medicine, University of Colorado, Aurora, CO, 80045, USA.
Bas HeinhuisDepartment of Internal Medicine, Radboud University Nijmegen Medical Centre, Nijmegen, The Netherlands.
Leo A B JoostenDepartment of Internal Medicine, Radboud University Nijmegen Medical Centre, Nijmegen, The Netherlands.
Emma NilssonDepartment of Clinical Sciences, Lund University Diabetes Centre, Lund University, Malmö, 205 02, Sweden.
Allan VaagDepartment of Endocrinology, Rigshospitalet, Copenhagen, 2100, Denmark.
Camilla ScheeleThe Centre of Inflammation and Metabolism and the Centre for Physical Activity Research, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark.
Charlotte LingDepartment of Clinical Sciences, Lund University Diabetes Centre, Lund University, Malmö, 205 02, Sweden. charlotte.ling@med.lu.se.
University of Copenhagen · DKLund University · SERadboud University Nijmegen · NLRigshospitalet · DKUniversity of Colorado Boulder · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHuman skeletal muscle stem cells are important for muscle regeneration. However, the combined genome-wide DNA methylation and expression changes taking place during adult myogenesis have not been described in detail and novel myogenic factors may be discovered. Additionally, obesity is associated with low relative muscle mass and diminished metabolism. Epigenetic alterations taking place during myogenesis might contribute to these defects.

methodsWe used Infinium HumanMethylation450 BeadChip Kit (Illumina) and HumanHT-12 Expression BeadChip (Illumina) to analyze genome-wide DNA methylation and transcription before versus after differentiation of primary human myoblasts from 14 non-obese and 14 obese individuals. Functional follow-up experiments were performed using siRNA mediated gene silencing in primary human myoblasts and a transgenic mouse model.

resultsWe observed genome-wide changes in DNA methylation and expression patterns during differentiation of primary human muscle stem cells (myoblasts). We identified epigenetic and transcriptional changes of myogenic transcription factors (MYOD1, MYOG, MYF5, MYF6, PAX7, MEF2A, MEF2C, and MEF2D), cell cycle regulators, metabolic enzymes and genes previously not linked to myogenesis, including IL32, metallothioneins, and pregnancy-specific beta-1-glycoproteins. Functional studies demonstrated IL-32 as a novel target that regulates human myogenesis, insulin sensitivity and ATP levels in muscle cells. Furthermore, IL32 transgenic mice had reduced insulin response and muscle weight. Remarkably, approximately 3.7 times more methylation changes (147,161 versus 39,572) were observed during differentiation of myoblasts from obese versus non-obese subjects. In accordance, DNMT1 expression increased during myogenesis only in obese subjects. Interestingly, numerous genes implicated in metabolic diseases and epigenetic regulation showed differential methylation and expression during differentiation only in obese subjects.

conclusionsOur study identifies IL-32 as a novel myogenic regulator, provides a comprehensive map of the dynamic epigenome during differentiation of human muscle stem cells and reveals abnormal epigenetic changes in obesity.

Indexed as

AnimalsCell DifferentiationDNA MethylationEpigenesis, GeneticHumansMiceMiddle AgedMuscle DevelopmentMuscle, SkeletalObesityStem CellsARPP21CGBDNA methylationEpigeneticsIL-32Insulin resistanceMTMyogenesisObesityPSGTGF-β3

Identifiers

PMID28222718
PMCPMC5320752
OpenAlexW2587823104

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.