Evidence map›Paper›PMID 28222324›Full record

ArticleComputerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society2017

Graph-based segmentation of abnormal nuclei in cervical cytology.

Ling Zhang, Hui Kong, Shaoxiong Liu, Tianfu Wang, Siping Chen, Milan Sonka

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In one paragraph

Article in Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 51 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Ling ZhangDepartment of Biomedical Engineering, School of Medicine, Shenzhen University, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Shenzhen 518060, China; Iowa Institute for Biomedical Imaging, The University of Iowa, Iowa City, IA 52242, USA. Electronic address: ling-zhang@uiowa.edu.
Hui KongSchool of Computer Science and Engineering, Nanjing University of Science and Technology, Nanjing 210094, China.
Shaoxiong LiuDepartment of Pathology, People's Hospital of Nanshan District, Shenzhen 518052, China.
Tianfu WangDepartment of Biomedical Engineering, School of Medicine, Shenzhen University, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Shenzhen 518060, China. Electronic address: tfwang@szu.edu.cn.
Siping ChenDepartment of Biomedical Engineering, School of Medicine, Shenzhen University, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Shenzhen 518060, China. Electronic address: chensiping@szu.edu.cn.
Milan SonkaIowa Institute for Biomedical Imaging, The University of Iowa, Iowa City, IA 52242, USA.
Shenzhen University · CNUniversity of Iowa · USAnshan Hospital · CNNanjing University of Science and Technology · CN

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Douglas Robert Spitz · 2000 to 2026
$70.0M
Graph-Based Medical Image Segmentation in 3D and 4DR01EB004640 · NIBIB · UNIVERSITY OF IOWA · PI BUATTI, JOHN M, SONKA, MILAN · 2006 to 2022
$6.1M
NIBIB NIH HHS R01 EB004640
6 · The paper itself

Abstract

A general method is reported for improving the segmentation of abnormal cell nuclei in cervical cytology images. In automation-assisted reading of cervical cytology, one of the essential steps is the segmentation of nuclei. Despite some progress, there is a need to improve the sensitivity, particularly the segmentation of abnormal nuclei. Our method starts with pre-segmenting the nucleus to define the coarse center and size of nucleus, which is used to construct a graph by image unfolding that maps ellipse-like border in the Cartesian coordinate system to lines in the polar coordinate system. The cost function jointly reflects properties of nucleus border and nucleus region. The prior constraints regarding the context of nucleus-cytoplasm position are utilized to modify the local cost functions. The globally optimal path in the constructed graph is then identified by dynamic programming with an iterative approach ensuring an optimal closed contour. Validation of our method was performed on abnormal nuclei from two cervical cell image datasets, Herlev and H&E stained manual liquid-based cytology (HEMLBC). Compared with five state-of-the-art approaches, our graph-search based method shows superior performance.

Indexed as

AlgorithmsAutomationCell NucleusCervix UteriCytological TechniquesCytoplasmFemaleHumansImage Processing, Computer-AssistedReproducibility of ResultsStaining and LabelingAbnormal nucleiCervical cellsGraph-based segmentationImage cytometrySegmentation

Identifiers

PMID28222324
PMCPMC5777156
OpenAlexW2584110890

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.