Evidence map›Paper›PMID 28222188›Full record

ArticlePLoS pathogens2017

The thermodynamics of Pr55Gag-RNA interaction regulate the assembly of HIV.

Hanumant S Tanwar, Keith K Khoo, Megan Garvey, Lynne Waddington, Andrew Leis, Marcel Hijnen, Tony Velkov, Geoff J Dumsday, William J McKinstry, Johnson Mak

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 45 citations in OpenAlex.

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  18. Nucleic acid-induced dimerization of HIV-1 Gag protein.The Journal of biological chemistry · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Hanumant S TanwarSchool of Medicine, Deakin University, Geelong, Australia.
Keith K KhooSchool of Medicine, Deakin University, Geelong, Australia.
Megan GarveySchool of Medicine, Deakin University, Geelong, Australia.ORCID 0000-0001-7988-7334
Lynne WaddingtonCSIRO Manufacturing, Parkville, Victoria, Australia.
Andrew LeisCSIRO Australian Animal Health Laboratory, Geelong, Australia.ORCID 0000-0003-4905-9401
Marcel HijnenGE Health, Life Science, Burnley, Australia.
Tony VelkovMonash Institute of Pharmaceutical Science, Parkville, Victoria, Australia.
Geoff J DumsdayCSIRO Manufacturing, Clayton, Victoria, Australia.ORCID 0000-0002-5080-8791
William J McKinstryCSIRO Manufacturing, Parkville, Victoria, Australia.
Johnson MakSchool of Medicine, Deakin University, Geelong, Australia.ORCID 0000-0002-5229-5707
Commonwealth Scientific and Industrial Research Organisation · AUCSIRO Manufacturing · AUDeakin University · AU

Funding

Targeting Drug Resistance in HIV-1 ProteaseR01GM064347 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SCHIFFER, CELIA A. · 2001 to 2013
$4.5M
NIGMS NIH HHS R01 GM064347
6 · The paper itself

Abstract

The interactions that occur during HIV Pr55Gag oligomerization and genomic RNA packaging are essential elements that facilitate HIV assembly. However, mechanistic details of these interactions are not clearly defined. Here, we overcome previous limitations in producing large quantities of full-length recombinant Pr55Gag that is required for isothermal titration calorimetry (ITC) studies, and we have revealed the thermodynamic properties of HIV assembly for the first time. Thermodynamic analysis showed that the binding between RNA and HIV Pr55Gag is an energetically favourable reaction (ΔG<0) that is further enhanced by the oligomerization of Pr55Gag. The change in enthalpy (ΔH) widens sequentially from: (1) Pr55Gag-Psi RNA binding during HIV genome selection; to (2) Pr55Gag-Guanosine Uridine (GU)-containing RNA binding in cytoplasm/plasma membrane; and then to (3) Pr55Gag-Adenosine(A)-containing RNA binding in immature HIV. These data imply the stepwise increments of heat being released during HIV biogenesis may help to facilitate the process of viral assembly. By mimicking the interactions between A-containing RNA and oligomeric Pr55Gag in immature HIV, it was noted that a p6 domain truncated Pr50Gag Δp6 is less efficient than full-length Pr55Gag in this thermodynamic process. These data suggest a potential unknown role of p6 in Pr55Gag-Pr55Gag oligomerization and/or Pr55Gag-RNA interaction during HIV assembly. Our data provide direct evidence on how nucleic acid sequences and the oligomeric state of Pr55Gag regulate HIV assembly.

Indexed as

Amino Acid SequenceBase SequenceBlotting, WesternCalorimetryChromatographyHIV-1ImmunoprecipitationMicroscopy, ElectronProtein PrecursorsRNA, ViralThermodynamicsVirus Assemblyp55 gag precursor protein, Human immunodeficiency virus 1Protein PrecursorsRNA, Viral

Identifiers

PMID28222188
PMCPMC5336307
OpenAlexW2590258378

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.